BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0979.p
         (419 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980769|ref|YP_001354259.1| Sun family protein [Janthinobac...   649   0.0  
gi|152981119|ref|YP_001351848.1| tRNA and rRNA cytosine-C5-methy...    94   2e-20

>gi|152980769|ref|YP_001354259.1| Sun family protein
           [Janthinobacterium sp. Marseille]
          Length = 418

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/417 (76%), Positives = 363/417 (87%)

Query: 1   MRLPPAIIPHTEELLREVLRFTGPADVTLSRYFRDNPRLGSRERGVIAEAVYGLLRNKTV 60
           MRLPPAII +TEE+LRE+LRFTGPAD TLSRYFRD+P+LGSRERGV+AEAVYGLLRNK V
Sbjct: 1   MRLPPAIINNTEEVLREILRFTGPADGTLSRYFRDHPKLGSRERGVVAEAVYGLLRNKAV 60

Query: 61  LTNFAESGSGPMMRRLALLGLADAVGAESIAGLQEGEADWLERVAQIDRTQLAPQMRSNL 120
            T+FAESG+GP MRR+ LLGLADAVG ES+ GL E E +WL  V QIDRT L   +RSN+
Sbjct: 61  YTSFAESGNGPTMRRMTLLGLADAVGVESLGGLTEEETEWLNHVMQIDRTLLPSLLRSNM 120

Query: 121 PPWLWEKLVARMGEDATLQLADAMNRPAPLDLRVNALKADRDTVIAELAKAPVACEPTPY 180
           P WL+EKLVAR GE A L+LA A+N+PAPLDLRVNA+KA R+ VI  LA+AP+ CEPTPY
Sbjct: 121 PEWLFEKLVARDGEAAALELAHAVNQPAPLDLRVNAIKATREDVIMALAEAPILCEPTPY 180

Query: 181 SPLGLRVFKKPALQNLPLFKDGAIEVQDEGSQLLAQIVGAKRGEMVVDFCAGAGGKTLAL 240
           +PLG+R+ KKPALQNLPLFK+G+IEVQDEGSQLL+QIVGAKRGEMVVDFCAGAGGKTL+L
Sbjct: 181 APLGIRIIKKPALQNLPLFKNGSIEVQDEGSQLLSQIVGAKRGEMVVDFCAGAGGKTLSL 240

Query: 241 GALMRNTGRLYAFDVSEKRLAKLKPRLARSGLSNVHPVVIAHENDAKVKRLAGKLDRVLV 300
           GA MRNTGRLYAFD+SEKRLAKLKPRLARSGLSNVHPV IAHENDAKVKRLAGK+DRVLV
Sbjct: 241 GAAMRNTGRLYAFDISEKRLAKLKPRLARSGLSNVHPVQIAHENDAKVKRLAGKIDRVLV 300

Query: 301 DAPCSGLGTLRRNPDMKWRQSVETLTEMRAKQGSILASAARLVRPGGRLVYGTCSFLEEE 360
           DAPCSGLGTLRRNPD+KWRQ+ ++L E+  KQ SILA AARLV+ GGRLVY TCS L+EE
Sbjct: 301 DAPCSGLGTLRRNPDVKWRQTPQSLVELNEKQASILAGAARLVKAGGRLVYATCSILDEE 360

Query: 361 NDEVIAEFLQSHPDFTLRPMSEVLAEQKIALDTGDYLKLLPHLHQTDGFFAAVMERR 417
           N+ ++A FL S  DF L PMSEVLAEQKI L   DYLKL P LH TDGFFAAV+ER+
Sbjct: 361 NEAIVASFLASRDDFVLIPMSEVLAEQKIDLKMDDYLKLSPALHHTDGFFAAVLERK 417


>gi|152981119|ref|YP_001351848.1| tRNA and rRNA
           cytosine-C5-methylases [Janthinobacterium sp. Marseille]
          Length = 437

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 130/260 (50%), Gaps = 13/260 (5%)

Query: 110 TQLAPQMRSNLPPWLWEKLVARMGEDATLQLADAMNRPAPLDLRVNALKADRDTVIAELA 169
           TQ A   R N P W  +++ +   ++    L +A N   PL LRVN  K   D  +A LA
Sbjct: 152 TQFA---RWNYPDWWIDRMRSAYPQNWQAIL-EAGNAAPPLTLRVNRRKTTVDAYLALLA 207

Query: 170 KAPVACEPTPYSPLGLRVFKKPALQNLPLFKDGAIEVQDEGSQLLAQIVGAKRGEMVVDF 229
           +  VA   T   P  +++ +   +  +P F +G + VQD  +QL A ++  + G  V+D 
Sbjct: 208 EQSVAA--TRIGPDAVKLAQPTPVGQIPGFNEGLVSVQDAAAQLAASLLDLRDGMRVLDA 265

Query: 230 CAGAGGKTLALGALMRNTG-RLYAFDVSEKRLAKLKPRLARSGLSNVHPVVIAHENDAKV 288
           CA  GGK+   G ++ +    L A D   +R+ ++   L R  L      ++  +  A  
Sbjct: 266 CAAPGGKS---GHILESADVELIALDNEARRMPRIAENLERLQL---QATLLTGDASATD 319

Query: 289 KRLAGKLDRVLVDAPCSGLGTLRRNPDMKWRQSVETLTEMRAKQGSILASAARLVRPGGR 348
                  DR+L D PC+  G +RR+PD++W +     T++ A   +IL +  ++++P G+
Sbjct: 320 WWDGKPFDRILADVPCTASGIVRRHPDIRWLRRKGDTTQLAAISATILDNLWQMLQPDGK 379

Query: 349 LVYGTCSFLEEENDEVIAEF 368
           L++ TCS   +E++   A F
Sbjct: 380 LLFVTCSLWPQESEAQAAAF 399


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 910,589
Number of extensions: 35803
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 2
Length of query: 419
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 333
Effective length of database: 903,079
Effective search space: 300725307
Effective search space used: 300725307
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)