BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0978.p
         (203 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980492|ref|YP_001354260.1| phosphoribosylglycinamide formy...   320   5e-89
gi|152980435|ref|YP_001352820.1| formyltetrahydrofolate deformyl...    99   1e-22

>gi|152980492|ref|YP_001354260.1| phosphoribosylglycinamide
           formyltransferase [Janthinobacterium sp. Marseille]
          Length = 209

 Score =  320 bits (819), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 154/199 (77%), Positives = 176/199 (88%)

Query: 1   MRSIVILISGRGSNMEAIVRAAQAERWPARIAAVISNRADASGLEFAASHGIATAVIANR 60
           MR IVILISGRGSNM AI+RAAQ E WPARIAAVISN+ADASGL +AA HGI+T V+AN+
Sbjct: 1   MRRIVILISGRGSNMRAIIRAAQNEEWPARIAAVISNKADASGLAYAAEHGISTLVVANK 60

Query: 61  DYPTRDQFDAALRAQIDTFAPDLVVLAGFMRILTAPFVNHYQGRMLNIHPSLLPSFPGLA 120
           DYP+R+ FDAAL+++ID+F PDLVVLAGFMR+LT PFV HY  RMLNIHPSLLPSF GLA
Sbjct: 61  DYPSREAFDAALQSKIDSFMPDLVVLAGFMRVLTTPFVAHYADRMLNIHPSLLPSFVGLA 120

Query: 121 THRQALAAGVKLHGATVHFVTPDLDHGPIVAQAAVPVLEDDSEETLAERVLEQEHVIYPR 180
           THRQALAAGVKLHGATVHFVT +LDHGPIVAQAAVPVL DD+EE+LA RVLEQEH+IYPR
Sbjct: 121 THRQALAAGVKLHGATVHFVTAELDHGPIVAQAAVPVLADDTEESLAARVLEQEHIIYPR 180

Query: 181 AVRWFVQGRLALDGARVRL 199
           A+R F+ GRL++    VR+
Sbjct: 181 AIRCFLDGRLSVHDGVVRI 199


>gi|152980435|ref|YP_001352820.1| formyltetrahydrofolate deformylase
           [Janthinobacterium sp. Marseille]
          Length = 288

 Score = 99.4 bits (246), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 102/197 (51%), Gaps = 7/197 (3%)

Query: 4   IVILISGRGSNMEAIVRAAQAERWPARIAAVISNRADASGLEFAASHGIATAVI----AN 59
           +++++S  G  +  ++   ++   P  I A++SN  D    + AAS+ I    +      
Sbjct: 90  VMLMVSKIGHCLNDLLFRYKSGLLPVEIPAIVSNHTDF--YQLAASYNIPFHHLPLAPGA 147

Query: 60  RDYPTRDQFDAALRAQIDTFAPDLVVLAGFMRILTAPFVNHYQGRMLNIHPSLLPSFPGL 119
            +   R Q D  L     +   DLVVLA +M+IL+       QGR +NIH S LPSF G 
Sbjct: 148 SEEAKRAQEDRVLEIA-KSAEIDLVVLARYMQILSPHMCQALQGRAINIHHSFLPSFKGA 206

Query: 120 ATHRQALAAGVKLHGATVHFVTPDLDHGPIVAQAAVPVLEDDSEETLAERVLEQEHVIYP 179
             + QA   GVKL GAT HFVT DLD GPI+ Q    V    +  TL     + E V+  
Sbjct: 207 KPYYQAHERGVKLIGATAHFVTGDLDEGPIIEQDVERVDHAMNPATLTAIGRDVECVVLA 266

Query: 180 RAVRWFVQGRLALDGAR 196
           RAV++F++ R+ L+G +
Sbjct: 267 RAVKYFIEHRILLNGHK 283


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 475,484
Number of extensions: 19497
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 2
Length of query: 203
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 124
Effective length of database: 928,958
Effective search space: 115190792
Effective search space used: 115190792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)