BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0972.p
         (271 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980338|ref|YP_001354267.1| 3-deoxy-manno-octulosonate cyti...   366   e-103

>gi|152980338|ref|YP_001354267.1| 3-deoxy-manno-octulosonate
           cytidylyltransferase (CMP-KDO synthetase)
           [Janthinobacterium sp. Marseille]
          Length = 250

 Score =  366 bits (939), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/256 (73%), Positives = 204/256 (79%), Gaps = 8/256 (3%)

Query: 1   MTFTVIIPARLASTRLPNKPLADLGGKPMIVRVAERAALSGAARIIVATDHHDIHAACQA 60
           M+FTVIIPARLASTRLPNKPLADLGGKPMIVRVAERA  SGAA++IVATDH DI AAC  
Sbjct: 1   MSFTVIIPARLASTRLPNKPLADLGGKPMIVRVAERAMQSGAAQVIVATDHADIFAACVQ 60

Query: 61  HGVEVAMTRADHPSGTDRIAEVAAALGLAEDAVVVNVQGDEPLIDPGLIAATAAHIKEGV 120
           H V V MTRADHPSGTDRIAEVAA +GL ++AVVVNVQGDEPLIDP LIAATA  I   V
Sbjct: 61  HKVAVQMTRADHPSGTDRIAEVAALIGLPDEAVVVNVQGDEPLIDPSLIAATATLISRDV 120

Query: 121 PMATAAHAIETAEDAFNPNVVKVVLNKEGCAMYFSRATIPWHRDAFAKSRAVLPDATGPD 180
           PMATAAHAI   E+ FNPNVVKVVL+K G A+YFSRATIPWHRD FA S+  +P      
Sbjct: 121 PMATAAHAISEIEEVFNPNVVKVVLDKSGRALYFSRATIPWHRDGFAVSKDAIPAG---- 176

Query: 181 HVNEYVPLRHIGLYAYSNRFLQLYPTLAPAPLERIEALEQLRVLWHGHAIAVHVTSLVPE 240
               Y PLRHIGLYAY N FLQ YP L+ +PLE++EALEQLRVLWHG  IAVHVT   P 
Sbjct: 177 ----YAPLRHIGLYAYRNAFLQEYPQLSVSPLEQLEALEQLRVLWHGVPIAVHVTPHAPV 232

Query: 241 AGVDTPEDLLRVRKHF 256
            GVDTPEDL RVR+ F
Sbjct: 233 TGVDTPEDLQRVRQFF 248


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 663,137
Number of extensions: 28062
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 189
Effective length of database: 917,867
Effective search space: 173476863
Effective search space used: 173476863
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)