BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0968.p
         (201 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981742|ref|YP_001354271.1| biopolymer transport protein Ex...   336   7e-94
gi|152981657|ref|YP_001354583.1| MotA/TolQ/ExbB proton channel f...    55   4e-09

>gi|152981742|ref|YP_001354271.1| biopolymer transport protein ExbB
           [Janthinobacterium sp. Marseille]
          Length = 203

 Score =  336 bits (861), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 165/203 (81%), Positives = 184/203 (90%), Gaps = 2/203 (0%)

Query: 1   LLAIILAAGWPIWPLLIASIIGLALVIERLVYLRRARILPPDLLGEVVRVYQSGRVTEDV 60
           +LAII AAGWPIW LLIAS+I L L+IER +YLRR RILPP LL EVVRVY+SGR+ ++V
Sbjct: 1   MLAIIHAAGWPIWLLLIASVIALTLIIERSMYLRRRRILPPSLLEEVVRVYRSGRIDDNV 60

Query: 61  IDKLEQNSPLGQVLAAGLRNVDAPREVMKEAIEEAGQGAAHRLERFLTTLGTIASLAPLM 120
           ++ LEQNSPLG+VLAAGLRNVDAPR+VMKE+IEEAG+G AH LERFLTTLGTIA+LAPLM
Sbjct: 61  VNTLEQNSPLGRVLAAGLRNVDAPRDVMKESIEEAGRGTAHTLERFLTTLGTIATLAPLM 120

Query: 121 GLFGTVVGMIEIFASQNAAGT--NPAQLAHGISIALYNTGFGLAIAMPALVFYRHFRALV 178
           GLFGTVVGMIEIF SQNA GT  NPAQLAHGISIALYNTGFGLAIAMP+LVFYRHFRALV
Sbjct: 121 GLFGTVVGMIEIFGSQNATGTGANPAQLAHGISIALYNTGFGLAIAMPSLVFYRHFRALV 180

Query: 179 DGFVVDMEQQAVKFVDIVHDVRR 201
           D F++DMEQQAVKFVDIVH  R+
Sbjct: 181 DSFIIDMEQQAVKFVDIVHGARK 203


>gi|152981657|ref|YP_001354583.1| MotA/TolQ/ExbB proton channel
           family protein [Janthinobacterium sp. Marseille]
          Length = 230

 Score = 54.7 bits (130), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 9/115 (7%)

Query: 80  NVDAPREVMKEAIEEAGQGAAHRLERFLTTLGTIASLAPLMGLFGTVVGMIEIFASQNAA 139
           N D P E++   + +     + RLE  LT L ++ S AP +GLFGTV G+     + +++
Sbjct: 106 NTD-PGELITRTLRQEINRVSSRLETGLTLLASVGSTAPFIGLFGTVWGIYHALVAVSSS 164

Query: 140 GT-NPAQLAHGISIALYNTGFGLAIAMPALVFYRHFR-------ALVDGFVVDME 186
           GT    ++A  +  AL  T  GLA+A+PA++ Y  F        A +D F  D+ 
Sbjct: 165 GTIQIDKVAGPVGEALIMTALGLAVAIPAVLAYNAFTRVNRVTLAELDAFAHDLH 219


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.326    0.142    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 479,173
Number of extensions: 20526
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 3
Length of query: 201
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 122
Effective length of database: 928,958
Effective search space: 113332876
Effective search space used: 113332876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)