BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0967.p
         (450 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980028|ref|YP_001354275.1| exodeoxyribonuclease VII large ...   622   e-179

>gi|152980028|ref|YP_001354275.1| exodeoxyribonuclease VII large
           subunit [Janthinobacterium sp. Marseille]
          Length = 453

 Score =  622 bits (1605), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 306/438 (69%), Positives = 353/438 (80%)

Query: 13  MLTVSALNQAVARMLERNFPLIWVKGEISNFTRAASGHWYFNLKDDGAQVRAVMFKGRAQ 72
           +L+VSALNQAV+RMLERNFPL WV GEISNFT AASGHWYF LKD  AQVRAVMF+GRAQ
Sbjct: 16  VLSVSALNQAVSRMLERNFPLSWVSGEISNFTCAASGHWYFTLKDSAAQVRAVMFRGRAQ 75

Query: 73  YAGFMPREGDKVEVRTLVTLYAPRGDYQLNVEAIRRSGVGDLYAAFVQLKERLEREGLFD 132
           YA FMPREGDKVEVR LVTLYAPRGDYQL+VEAIRR+GVG+LY AF+QLKE+L  EGLFD
Sbjct: 76  YADFMPREGDKVEVRALVTLYAPRGDYQLSVEAIRRAGVGNLYEAFLQLKEKLNAEGLFD 135

Query: 133 RERKRALPGFPRRIGIVTSPQAAALRDVLTTLRRRAPHVEVVLYPTPVQGEGAAQRIATA 192
             RKRA+P F R IGIVTSPQAAALRD+LTTL+RRAPHV V+LYPTPVQGEG+A +IA A
Sbjct: 136 PARKRAIPSFARTIGIVTSPQAAALRDILTTLQRRAPHVRVILYPTPVQGEGSANKIAQA 195

Query: 193 IQTASARAECDVLLVCRGGGSIEDLWSFNEEVVARAIVAAAMPVISGVGHETDFTIADFA 252
           I TASARAECDVLLVCRGGGSIEDLWSFN E+VAR IV   +PVI GVGHETDFTIADFA
Sbjct: 196 IATASARAECDVLLVCRGGGSIEDLWSFNHELVARTIVGCDIPVIVGVGHETDFTIADFA 255

Query: 253 ADLRAPTPTAAAELAATAREDWLAELRSHALDLTRALRRSLTDKAQSVDWLARRLVNPGA 312
           ADLRAPTPTAAAELAAT R DWLA L + A D+   L+R L+D AQ++DWL+RRL++P A
Sbjct: 256 ADLRAPTPTAAAELAATPRADWLARLEAQADDMRYVLKRQLSDTAQTLDWLSRRLISPAA 315

Query: 313 YIQHERVKLAALQTRLSHATRVPLTRMRHRLQQLSTHLAHQIPDTAHARRDLHDLARRLQ 372
           YI HER+KL  LQ RL HATR+PL++ +  L QL      Q+PDT   R  + + ARR+ 
Sbjct: 316 YIAHERMKLQNLQARLGHATRIPLSKAQFALAQLRNRWLSQLPDTQAQRLHVINHARRMS 375

Query: 373 GAQAAQQLRQRQVLAGWHTQLELLNPQRTLERGYAIVSDRQGRVLHAPAELAARSEVTIR 432
                    QRQ LA    QLE+LNPQRTLERGYA+++D +G+++ AP EL  R  VT+R
Sbjct: 376 NQINNHIASQRQSLAALSAQLEMLNPQRTLERGYAMITDEKGKIVRAPKELQPRQSVTVR 435

Query: 433 LAQGSAEVGIASVQPRLD 450
           LA G+A+VGIASVQ  L+
Sbjct: 436 LADGTAQVGIASVQETLE 453


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 883,905
Number of extensions: 31293
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 364
Effective length of database: 903,079
Effective search space: 328720756
Effective search space used: 328720756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)