BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0964.p (307 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981779|ref|YP_001353589.1| hypothetical protein mma_1899 [... 402 e-113 gi|152980755|ref|YP_001352153.1| membrane-associated protein ded... 63 3e-11 gi|152980844|ref|YP_001353992.1| dedA family protein [Janthinoba... 55 5e-09 >gi|152981779|ref|YP_001353589.1| hypothetical protein mma_1899 [Janthinobacterium sp. Marseille] Length = 309 Score = 402 bits (1034), Expect = e-113, Method: Compositional matrix adjust. Identities = 200/306 (65%), Positives = 253/306 (82%) Query: 1 MDTLYHLIEQYGLILVFVNVLVEQLGAPVPAYPTLIITGALSASGRYSPALLLLLAVCAA 60 M L +LIEQYGL+ VF NVL+EQLGAP+PAYPTL+ITGAL G YS +LLL+AV AA Sbjct: 1 MSFLLNLIEQYGLLFVFGNVLLEQLGAPIPAYPTLVITGALLDRGDYSAPMLLLVAVVAA 60 Query: 61 LMADYVWYLAGRRYGRQIMSRLCRISLSPDSCVRQTESIYLRWGARSLLLAKFIPGFASI 120 L+AD+ WY+AGRRYG ++M+RLC+ISLSPDSCVRQTE++Y+R+G SLL+AKFIPGFAS+ Sbjct: 61 LIADFAWYMAGRRYGGRVMARLCKISLSPDSCVRQTEAMYIRYGPASLLVAKFIPGFASV 120 Query: 121 ASALSGTMGTRRLSFVLWDAAGSALWAGLGIFLGSLFSSAVDDLLNVLAELGHYGMLMIA 180 ASAL+G +GTR F+++DA G+ALWAG IFLGSLFSSAV DLL++LA LG +G+L++A Sbjct: 121 ASALAGAIGTRPAKFIIFDALGAALWAGSAIFLGSLFSSAVADLLDILASLGKWGILLVA 180 Query: 181 VALAAFVANKWWQRRRFRKSLAMARISVDELNTLLEAGNAPTIIDVRSPLSQQDGRIPGA 240 +A A ++A KWWQR F K L MARI+VDEL+ LL+ G PTIIDVRS L+QQ G+IPGA Sbjct: 181 LAFAVYLAKKWWQRHSFLKDLRMARITVDELDQLLKNGTPPTIIDVRSGLAQQSGKIPGA 240 Query: 241 VTISNQEIQTFVFDGPVEGEVVVYCACPNEASAALVARQLMRRGYTRVRPLTGGIDAWRA 300 + +S+ +I V + ++ EV+VYCACPNEASAA +A++LM RGY RVRPLTGGIDAW A Sbjct: 241 MVLSDDDISALVVNTELDSEVIVYCACPNEASAARIAKKLMARGYRRVRPLTGGIDAWVA 300 Query: 301 AGYAID 306 AG++ID Sbjct: 301 AGHSID 306 >gi|152980755|ref|YP_001352153.1| membrane-associated protein dedA [Janthinobacterium sp. Marseille] Length = 214 Score = 62.8 bits (151), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 15/202 (7%) Query: 7 LIEQYGLIL--VFVNVLVEQLGAPV----PAYPTLIITGALSASGRYSPALLLLLAVCAA 60 I QYG+++ V ++ + G V P L I GA ASG + LLL L + AA Sbjct: 20 FIAQYGMLIYVVLFAIIFSETGLVVFPLLPGDTLLFIAGAFCASGSMNLWLLLGLLMAAA 79 Query: 61 LMADYVWYLAGRRYGRQIMSRLCRISLSPDSCVRQTESIYLRWGARSLLLAKFIPGFASI 120 ++ + V Y G G ++ + R L D+ +R+T + Y + G ++L+LA+FIP + Sbjct: 80 ILGNTVNYWIGHAIGEKVFTHDYR-WLDRDA-LRKTHTFYEKHGGKTLILARFIPIARTF 137 Query: 121 ASALSGTMGTRRLSFVLWDAAGSALWAGLGIFLGSLFSS--AVDDLLNVLAELGHYGMLM 178 A ++G F L++ G+ LW GL + G LF + + D LN + +G G Sbjct: 138 APFIAGVSEMTFFRFQLFNCIGAVLWVGLLVVGGYLFGNIPIIRDHLNTIVLIG-VGAAA 196 Query: 179 IAVALAAFVANKWWQRRRFRKS 200 + VAL A W +RF+ Sbjct: 197 VPVALGAL----WKVLQRFKNK 214 >gi|152980844|ref|YP_001353992.1| dedA family protein [Janthinobacterium sp. Marseille] Length = 199 Score = 55.1 bits (131), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/167 (20%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 1 MDTLYHLIEQYGLILVFVNVLVEQLGAPVPAYPTLIITGALSASGRYSPALLLLLAVCAA 60 ++ ++ Q G + +F+ +L E + P+P+ + + G ++A G + +++L+ + Sbjct: 2 FHSIVDIVSQGGYLGIFLLMLAENVFPPIPSELIMPLAGFVAARGELNIFVVILVGTAGS 61 Query: 61 LMADYVWYLAGRRYGRQIMSRLCR-----ISLSPDSCVRQTESIYLRWGARSLLLAKFIP 115 ++ WY AG +G++ + RL +++SP + + + R A ++ + IP Sbjct: 62 VVGALPWYYAGALFGKERLKRLAARHGRWLTVSPGD-IDKASGWFERHDAAAVFFGRLIP 120 Query: 116 GFASIASALSGTMGTRRLSFVLWDAAGSALWAGLGIFLGSLFSSAVD 162 ++ S +G + L F+L+ GS +W G L S + Sbjct: 121 AIRTLISVPAGGVKMPMLPFLLYSTVGSLIWTSFLALTGYLLQSQYE 167 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 669,794 Number of extensions: 25056 Number of successful extensions: 138 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 138 Number of HSP's successfully gapped: 3 Length of query: 307 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 224 Effective length of database: 914,170 Effective search space: 204774080 Effective search space used: 204774080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)