BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0957.p
         (441 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980821|ref|YP_001354055.1| periplasmic serine protease [Ja...   103   2e-23
gi|152981037|ref|YP_001353055.1| periplasmic serine protease [Ja...    98   1e-21
gi|152981007|ref|YP_001354965.1| htra-like serine protease signa...    86   5e-18

>gi|152980821|ref|YP_001354055.1| periplasmic serine protease
           [Janthinobacterium sp. Marseille]
          Length = 453

 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/177 (37%), Positives = 105/177 (59%), Gaps = 15/177 (8%)

Query: 261 ERGSGTGFYIGSSGWLLTNYHVIGGAQSVRVRLPTGRELVAQVARADAARDIALLKTETP 320
           E   G+GF + + G++LTN HV+     + V+LP  RE  A++  +DA  D+ALLK +  
Sbjct: 75  EASLGSGFIVSTDGYILTNAHVVARGTQISVKLPDRREFKARLIGSDAVADVALLKIDAQ 134

Query: 321 GVRPMP-LRNGEPG---VGEDVYALGSPLGDAFNTTLTRGILSGVRMV----RDLEFLQS 372
           G   +P +R G P    VG+   A+GSP G  F+ + T GI+S  R +      + FLQ+
Sbjct: 135 G---LPTVRIGNPNKVEVGDWALAIGSPFG--FSNSATAGIISATRRILPGADYIPFLQT 189

Query: 373 DVAILPGSSGGPLLDKSGQVVGITVAGL-GAKGLAGMNFFIPVGSAIERLHLQLQNQ 428
           DV + PG+SGGPL ++ G+V+GI       + G  G++F IP+ +A+ R+  QLQ++
Sbjct: 190 DVPVNPGNSGGPLFNQYGEVIGINSRIYSNSGGYQGLSFAIPIDAAM-RIKEQLQDK 245


>gi|152981037|ref|YP_001353055.1| periplasmic serine protease
           [Janthinobacterium sp. Marseille]
          Length = 493

 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 100/171 (58%), Gaps = 11/171 (6%)

Query: 262 RGSGTGFYIGSSGWLLTNYHVIGGAQSVRVRLPTGRELVAQVARADAARDIALLKTETPG 321
           RG G+GF I + G+++TN HV+ GA  V V L   RE  A++  AD   D+AL+K E   
Sbjct: 116 RGVGSGFIISADGYVMTNAHVVNGADEVYVTLTDKREYKAKIIGADTRTDVALVKIEGSN 175

Query: 322 VRPMPLRNGEP-GVGEDVYALGSPLGDAFNTTLTRGILSGVRMVRD----LEFLQSDVAI 376
           +  + + +     VGE V A+GSP G   + ++T GI+S     RD    L  +Q+DVA+
Sbjct: 176 LPRLTMGDSNKIRVGEWVIAIGSPFG--LDNSVTAGIVSA--KARDTGDYLPLIQTDVAV 231

Query: 377 LPGSSGGPLLDKSGQVVGITVAGLG-AKGLAGMNFFIPVGSAIERLHLQLQ 426
            PG+SGGPL++  G+V+GI       + G  G++F +P+  A+ R+  QL+
Sbjct: 232 NPGNSGGPLINMRGEVIGINSQIYSRSGGYMGISFAVPIDEAM-RVSDQLR 281


>gi|152981007|ref|YP_001354965.1| htra-like serine protease signal
           peptide protein [Janthinobacterium sp. Marseille]
          Length = 391

 Score = 85.9 bits (211), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 95/171 (55%), Gaps = 10/171 (5%)

Query: 265 GTGFYIGSSGWLLTNYHVIGGAQSVRVRLPTGRELVAQVARADAARDIALLKTETPGVRP 324
           G+G  + + G++LTN HV+  A  + V L  GR+ +A+V  +D   D+A++K     +  
Sbjct: 114 GSGVIVSAEGYILTNNHVVEAADEIEVALTDGRKAIAKVVGSDPETDLAVIKINLDNLPA 173

Query: 325 MPL-RNGEPGVGEDVYALGSPLGDAFNTTLTRGILSG-----VRMVRDLE-FLQSDVAIL 377
           + L R  E  VG+ V A+G+P G     T+T GI+S      + ++   E F+Q+D AI 
Sbjct: 174 ITLGRVEEARVGDVVLAIGNPFG--VGQTVTMGIISALGRNHLGILDAFENFIQTDAAIN 231

Query: 378 PGSSGGPLLDKSGQVVGITVAGLG-AKGLAGMNFFIPVGSAIERLHLQLQN 427
           PG+SGG L+D +G ++GI  A    + G  G+ F IPV +    +   ++N
Sbjct: 232 PGNSGGALIDANGNLLGINTAIYSRSGGSLGIGFAIPVTTVKSVMDAIIKN 282


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,071,286
Number of extensions: 48072
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 3
Length of query: 441
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 355
Effective length of database: 903,079
Effective search space: 320593045
Effective search space used: 320593045
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)