BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0955.p
         (145 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983074|ref|YP_001352713.1| MarR family transcriptional reg...    95   2e-21

>gi|152983074|ref|YP_001352713.1| MarR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 147

 Score = 95.1 bits (235), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 79/129 (61%), Gaps = 4/129 (3%)

Query: 5   TCTCAPLRRLTRRITIIYDHHLQDSELSITQYSLISRIGRKGPIANITLAQEMGMDRSTL 64
            C C   R+  R IT IY+ HLQ + ++ +QY++++ +  +  I+ + LA+E+GMDR++L
Sbjct: 15  VCNCFAARKAARFITQIYERHLQKAGITGSQYTILTVVRSRPGISMLELAEELGMDRTSL 74

Query: 65  SRALKPLMAAGWIETVDLPEDELLDKRSFALQLSRSGRSKLEQARPRWRRAQDDIDRRLG 124
            RALKPL    +I  VD P +   D R   L LSR+G +K E++ P WR AQ + + ++G
Sbjct: 75  VRALKPLYREAYI--VDAPSET--DSRKMLLTLSRAGITKFEESDPHWRAAQQEWNNKVG 130

Query: 125 PKLARQFND 133
            + A+   +
Sbjct: 131 SERAKALRE 139


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 269,451
Number of extensions: 8982
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 70
Effective length of database: 943,746
Effective search space: 66062220
Effective search space used: 66062220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)