BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0949.p
         (231 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981742|ref|YP_001354271.1| biopolymer transport protein Ex...    76   2e-15
gi|152980246|ref|YP_001354154.1| biopolymer transport protein [J...    61   7e-11

>gi|152981742|ref|YP_001354271.1| biopolymer transport protein ExbB
           [Janthinobacterium sp. Marseille]
          Length = 203

 Score = 75.9 bits (185), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 98/196 (50%), Gaps = 4/196 (2%)

Query: 6   LLSLANGSGGTLYLMLVLLLVALTVIVERTRYLANMQLGGNELIEAIRLSPQQGDITLSA 65
           +L++ + +G  ++L+L+  ++ALT+I+ER+ YL   ++    L+E +    + G I  + 
Sbjct: 1   MLAIIHAAGWPIWLLLIASVIALTLIIERSMYLRRRRILPPSLLEEVVRVYRSGRIDDNV 60

Query: 66  RQATLPHARLFEVLQREPAQVD--RATLDGHLEEAIMHEVPGLDRSLWLLDTVVTLAPLL 123
                 ++ L  VL      VD  R  +   +EEA       L+R L  L T+ TLAPL+
Sbjct: 61  VNTLEQNSPLGRVLAAGLRNVDAPRDVMKESIEEAGRGTAHTLERFLTTLGTIATLAPLM 120

Query: 124 GLFGTIIGMFNAFHVLGDVQNGA--SQVTGGIAEALVATASGLFIAMIGLAFFNALHTRV 181
           GLFGT++GM   F        GA  +Q+  GI+ AL  T  GL IAM  L F+      V
Sbjct: 121 GLFGTVVGMIEIFGSQNATGTGANPAQLAHGISIALYNTGFGLAIAMPSLVFYRHFRALV 180

Query: 182 RIVLHQLETIKIMLVN 197
              +  +E   +  V+
Sbjct: 181 DSFIIDMEQQAVKFVD 196


>gi|152980246|ref|YP_001354154.1| biopolymer transport protein
           [Janthinobacterium sp. Marseille]
          Length = 230

 Score = 60.8 bits (146), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 4/91 (4%)

Query: 89  ATLDGH---LEEAIMHEVPGLDRSLWLLDTVVTLAPLLGLFGTIIGMFNAFHVLGDVQNG 145
           A LDG    +  A   E+  L+  L  L +V +++P +GLFGT+ G+ NAF  L +VQ  
Sbjct: 111 ARLDGARRAMRAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQA 170

Query: 146 A-SQVTGGIAEALVATASGLFIAMIGLAFFN 175
             + V  GIAEAL+ATA GLF A+  +  +N
Sbjct: 171 TLAAVAPGIAEALIATAIGLFAAIPAVVAYN 201


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.137    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 513,397
Number of extensions: 19516
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 2
Length of query: 231
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 151
Effective length of database: 925,261
Effective search space: 139714411
Effective search space used: 139714411
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)