BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0947.p (218 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981350|ref|YP_001354553.1| two-components system response ... 174 5e-45 gi|152981323|ref|YP_001354612.1| two components system response ... 171 3e-44 gi|152983128|ref|YP_001354753.1| two-component response regulato... 157 4e-40 gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 154 4e-39 gi|152981423|ref|YP_001354086.1| two-components system response ... 148 3e-37 >gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 233 Score = 174 bits (440), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 88/218 (40%), Positives = 139/218 (63%), Gaps = 2/218 (0%) Query: 1 MRLLLVEDDFMLGDSVRKGFYPLGFVVDWMRDGISAQAALEVESYAAVVLDLGLPGRNGL 60 MR+LL EDD +L D + + G+ D +++G A + L + + ++LDLGLP +GL Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYATDCVKNGAEADSVLSTQDFDLLILDLGLPKMSGL 60 Query: 61 EVLKKLRQDRDNTPVIIASACDAVQQRIAGLNAGADDYVNKPFDLEELAARIRALLRRVQ 120 EVL++LR PV+I +A D+++QR+ GL+ GADD++ KPF L EL AR+RAL RR Sbjct: 61 EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120 Query: 121 GRQSSTMVHGEVEFDPATQVVRHRGRRVALSAREMLVLSALIEKPEAVLSRAQLVERIYG 180 G + + HG + +D ++ + + LSARE+ +L L+++ ++S+ QLV+ + Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQMLDLSARELGLLEVLLQRSGRLVSKEQLVDHLCE 180 Query: 181 WNEEVDSNTIEVHIHALRKKIAPDVVR--NIRGLGYTM 216 W+EEV +N IEV++H LRKKI +R +RGLGY + Sbjct: 181 WSEEVSNNAIEVYVHRLRKKIEIGGLRIATVRGLGYCL 218 >gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 171 bits (433), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 137/218 (62%), Gaps = 2/218 (0%) Query: 1 MRLLLVEDDFMLGDSVRKGFYPLGFVVDWMRDGISAQAALEVESYAAVVLDLGLPGRNGL 60 MR+L+VEDD +L ++ + G+ VD + +G A AL + YA ++LD+ LP +GL Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYSVDHVDNGEDAHRALANDIYALLLLDISLPKMDGL 60 Query: 61 EVLKKLRQDRDNTPVIIASACDAVQQRIAGLNAGADDYVNKPFDLEELAARIRALLRRVQ 120 VL++LR+ + PV+I +A D + R+AGL+ GADDY+ KPFDL E AR+RAL+RR Q Sbjct: 61 AVLRRLRERKSRLPVLILTARDTLDDRVAGLDLGADDYMTKPFDLPEFEARVRALIRRGQ 120 Query: 121 GRQSSTMVHGEVEFDPATQVVRHRGRRVALSAREMLVLSALIEKPEAVLSRAQLVERIYG 180 + HG + FD + + + V LS RE+ V L+ + V+++ Q+++R++G Sbjct: 121 FDAGKMLTHGGLRFDLEAHRLFYNDQPVELSVRELAVFEVLLSRQGQVVTKEQMIDRLFG 180 Query: 181 WNEEVDSNTIEVHIHALRKKIAPD--VVRNIRGLGYTM 216 W ++ SN IEV++H RKK+ P +R +RG+GY + Sbjct: 181 WGDDGGSNAIEVYVHRTRKKLEPYNINIRTVRGMGYLL 218 >gi|152983128|ref|YP_001354753.1| two-component response regulator [Janthinobacterium sp. Marseille] Length = 239 Score = 157 bits (397), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 84/217 (38%), Positives = 132/217 (60%) Query: 1 MRLLLVEDDFMLGDSVRKGFYPLGFVVDWMRDGISAQAALEVESYAAVVLDLGLPGRNGL 60 M++L+VEDD ++ + G G V + +SA+ A+ + +VLDLGLP ++GL Sbjct: 20 MQVLVVEDDELIASGLAAGLQAHGMVAVCVTTAVSAEQAIYAADFDVMVLDLGLPDQDGL 79 Query: 61 EVLKKLRQDRDNTPVIIASACDAVQQRIAGLNAGADDYVNKPFDLEELAARIRALLRRVQ 120 +LK+ R + + PVI+ +A DA++ RIAGL +GADDYV KPFDL ELAARI A++RR + Sbjct: 80 TLLKETRSRKLSLPVIVLTARDAIEYRIAGLQSGADDYVLKPFDLGELAARIHAVVRRSK 139 Query: 121 GRQSSTMVHGEVEFDPATQVVRHRGRRVALSAREMLVLSALIEKPEAVLSRAQLVERIYG 180 GR + + G + DP V + +ALS RE +L L L+ + L +R++G Sbjct: 140 GRATQEITAGPLRLDPQYGQVWLNEKLIALSRREFDILIHLANAAGHWLAPSTLRDRVFG 199 Query: 181 WNEEVDSNTIEVHIHALRKKIAPDVVRNIRGLGYTMA 217 + ++ SN + VHIH +R+K+ + + RGLG+ + Sbjct: 200 EDIQISSNALNVHIHNIRRKLGAEAIETSRGLGFRLG 236 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 154 bits (390), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 90/221 (40%), Positives = 138/221 (62%), Gaps = 7/221 (3%) Query: 1 MRLLLVEDDFMLGDSVRKGFYPLGFVVDWMRDGISA-QAALEVESYAAVVLDLGLPGRNG 59 M++LLVED+ G+ +RKG GFVVDW RDG Q AL+ ESY V+LD+ LP +G Sbjct: 1 MKILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQ-ESYELVILDVMLPLLDG 59 Query: 60 LEVLKKLRQDRDNTPVIIASACDAVQQRIAGLNAGADDYVNKPFDLEELAARIRALLRRV 119 ++L++LR+ RD TPV+ +A D V+ R+ GL GADDY+ KPF EL AR+R LLRR Sbjct: 60 WQLLRELRKVRD-TPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRG 118 Query: 120 QGRQSSTMVHGEVEFDPATQVVRHRGRRVALSAREMLVLSALIEKPEAVLSRAQLVERIY 179 R+SS + +++ D + V G R+ L+A+E +L L ++ VLSR+ + +++ Sbjct: 119 PVRESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVW 178 Query: 180 GWNEEVDSNTIEVHIHALRKKI----APDVVRNIRGLGYTM 216 N + D+N ++V I LR K+ +++ +RG+GY + Sbjct: 179 DMNFDSDTNVVDVAIRRLRAKLDDPHPRKLIQTVRGIGYVL 219 >gi|152981423|ref|YP_001354086.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 221 Score = 148 bits (373), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 83/217 (38%), Positives = 119/217 (54%) Query: 1 MRLLLVEDDFMLGDSVRKGFYPLGFVVDWMRDGISAQAALEVESYAAVVLDLGLPGRNGL 60 MR LLVEDD +G V + GFVVDW RDG A +VE + +LDLGLP +GL Sbjct: 1 MRALLVEDDPDVGQHVLQALQEAGFVVDWSRDGNDAWFKGDVEEFDVAILDLGLPQLDGL 60 Query: 61 EVLKKLRQDRDNTPVIIASACDAVQQRIAGLNAGADDYVNKPFDLEELAARIRALLRRVQ 120 VL++ R + PV+I SA +++ G+ +GADDY+ KPF++ EL AR RAL+RR Sbjct: 61 SVLRRWRAAKRTFPVLILSARSDWSEKVEGIESGADDYLAKPFEVAELIARTRALVRRAA 120 Query: 121 GRQSSTMVHGEVEFDPATQVVRHRGRRVALSAREMLVLSALIEKPEAVLSRAQLVERIYG 180 G ++ G + D + V LS E S L + +S +L E +YG Sbjct: 121 GHADPVLICGALTLDTRRMTATVDKQPVRLSPLEFRFFSYLAHQAGRPVSAGELAEHLYG 180 Query: 181 WNEEVDSNTIEVHIHALRKKIAPDVVRNIRGLGYTMA 217 +E VD+N IE + +R+K D++ RG GY ++ Sbjct: 181 DSEGVDTNAIEALVLRMRRKFGADLIETRRGFGYMLS 217 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 462,483 Number of extensions: 16717 Number of successful extensions: 156 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 27 Length of query: 218 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 138 Effective length of database: 925,261 Effective search space: 127686018 Effective search space used: 127686018 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)