BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0946.p (462 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcr... 177 2e-45 gi|152982775|ref|YP_001354611.1| two-components system response ... 160 2e-40 gi|152983127|ref|YP_001354752.1| two-component sensor kinase [Ja... 128 9e-31 gi|152982364|ref|YP_001355202.1| two-component sensor histidine ... 115 7e-27 gi|152980724|ref|YP_001353975.1| two-component system sensor kin... 110 2e-25 >gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 544 Score = 177 bits (448), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 116/330 (35%), Positives = 179/330 (54%), Gaps = 14/330 (4%) Query: 122 LVQVAQSLDGRREIAITHALHSLPPLLLFLLLMALFIRRTVDRSLHSLHLLSHQVAARSP 181 LVQVA++LD R ++ + P + L + + + + R L L L ++ R P Sbjct: 212 LVQVAETLDKRSQLVNQIIKGVIVPEFIILPIALVLVWFALTRGLRPLVELQQRIRERRP 271 Query: 182 DSLEQIGEHGHCSDVRPLAKALNSLLERLGIALKSHRHFIADASHELRTPLAALQIQALV 241 D L I ++ PL +LN +LERL ++K + FIADA+H+++TPLA +++Q+ + Sbjct: 272 DDLSPIDSGYVPEEILPLVGSLNEMLERLSQSIKVQKRFIADAAHQMKTPLAGMRMQSEL 331 Query: 242 VEQSLGSGQEQAALNDLKRGIQRTSHLVNQLLTVSRLENGALEEHHAE-IDLHALVRQAV 300 + + +L L + + + ++NQLL ++R EN + ++L L R V Sbjct: 332 ALRQTDQVEIHKSLEQLAKSSKSATRMINQLLALARAENQTPTTRPLQPLELSELARDTV 391 Query: 301 IDLLPLARSHAINLGAEQLDSTTVVAAPD-QLGILVRNLIDNAVRYTPTGGQVDVSLRVV 359 + + + + I+LG EQ D +V L L+ NLIDNA+ YTP GG V +R Sbjct: 392 QEWVQTSFNKKIDLGFEQPDYHIMVNGDAIMLRELLNNLIDNALNYTPAGGHATVRVRAD 451 Query: 360 EGR--ALLEVEDSGPGIPVEERQRVFERFYRRQVQQSEGSGLGLAIVREIARQHGLRLGL 417 E A LEVED+GPGI E +R+FERFYR EGSGLGLAIVREIA+QHG + + Sbjct: 452 EEARLAYLEVEDTGPGIAPHEHKRIFERFYRILGSNVEGSGLGLAIVREIAQQHGAEIDI 511 Query: 418 DDSPRLGG-------LRVSVAFEISTRPAP 440 ++P +R+++ E +PAP Sbjct: 512 LNNPNCTNPKAPGCLMRITLPLE---QPAP 538 >gi|152982775|ref|YP_001354611.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 470 Score = 160 bits (405), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 105/274 (38%), Positives = 149/274 (54%), Gaps = 1/274 (0%) Query: 160 RTVDRSLHSLHLLSHQVAARSPDSLEQIGEHGHCSDVRPLAKALNSLLERLGIALKSHRH 219 R V L L L ++A RS L I +V PL A+N L+ R+ L Sbjct: 190 RGVAHGLSPLRKLQQELAMRSHLDLSPIAADNVPGEVEPLVGAVNDLMTRVDGVLGFQGR 249 Query: 220 FIADASHELRTPLAALQIQALVVEQSLGSGQEQAALNDLKRGIQRTSHLVNQLLTVSRLE 279 FIAD +H+LRTP+A L+ A + + Q + AL L +R S LV+QLL+++R E Sbjct: 250 FIADTAHQLRTPVAGLKAHAELALRETDPVQVKRALGHLYTSAERLSRLVSQLLSLARNE 309 Query: 280 NGALEEHHAEIDLHALVRQAVIDLLPLARSHAINLGAEQLDSTTVV-AAPDQLGILVRNL 338 + + A DL+ L + + +PLA I+LG E + T ++ ++ ++ NL Sbjct: 310 PNNVAVNFAPFDLNQLALRTAQEWVPLAYKKQIDLGFETAEQTVLLNGEAARVTEMINNL 369 Query: 339 IDNAVRYTPTGGQVDVSLRVVEGRALLEVEDSGPGIPVEERQRVFERFYRRQVQQSEGSG 398 +DNA+RYTP+GG+V V + E A L V D G IP++ERQR+FERF+R EGSG Sbjct: 370 VDNAIRYTPSGGRVTVRVHKDEEGAHLVVSDDGTRIPIDERQRIFERFHRLLGNHEEGSG 429 Query: 399 LGLAIVREIARQHGLRLGLDDSPRLGGLRVSVAF 432 LGLAIV EIA H R+ L+D G +V F Sbjct: 430 LGLAIVHEIATLHNARITLEDDIDGVGNTFTVTF 463 >gi|152983127|ref|YP_001354752.1| two-component sensor kinase [Janthinobacterium sp. Marseille] Length = 445 Score = 128 bits (321), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 98/319 (30%), Positives = 165/319 (51%), Gaps = 15/319 (4%) Query: 100 GFSTVHWHGAPWRIYVRKTGQHLVQVAQSLDGRREIAITHALHSLPPLLLFLL--LMALF 157 G ST G WR Y ++GQ+ + + ++ RR L + P L+ ++ L+AL+ Sbjct: 109 GLSTKIVDGQTWRAYTLQSGQYRITASDLVEERRHFVDAVLLSAGLPFLVAVIGGLLALW 168 Query: 158 IRRTVDRSLHSLHLLSHQVAARSPDSLEQIGEHGHCSDVRPLAKALNSLLERLGIALKSH 217 I + + L L LS + ++ + L I + ++RP+ +LN +L R+ L Sbjct: 169 I--GIGKGLGPLAALSKTLQKKNANDLAPIADQYASKELRPVIDSLNQMLGRVSSTLVQQ 226 Query: 218 RHFIADASHELRTPLAALQIQALVVEQSLGSGQEQAALNDLKRGIQRTSHLVNQLLTVSR 277 R F A+HELRTPL + V + S G+ E +LN + G++R +H + Q++ ++R Sbjct: 227 RAFTDGAAHELRTPLTIIGTHLQVAKLSTGTALE-VSLNSAEEGVRRLNHTLEQMMALAR 285 Query: 278 LENGALEEHHAEIDLHALVRQAVIDLLPLARSHAINLGAEQLDSTTVVAAPDQLGILVRN 337 ++ +EE E D +LV + +++ LP + + + D+ V A L VRN Sbjct: 286 ADSVTVEE---ECDSVSLVIEELVERLPTVSMRRLRIDFAEQDAGAKVPA-SLLHTAVRN 341 Query: 338 LIDNAVRYTPTGGQVDVSLRVVEGRAL--LEVEDSGPGIPVEERQRVFERFYRRQVQ--Q 393 L+DNA RY+ G V +S+ + L + V DSGPG+ E+ V +RF+R + Sbjct: 342 LLDNAFRYSM--GMVLLSVTFDNHKKLCRISVADSGPGLTEEQISVVSQRFWRGKTSTHT 399 Query: 394 SEGSGLGLAIVREIARQHG 412 +GSGLGL+IV I ++G Sbjct: 400 QDGSGLGLSIVSAIVGRYG 418 >gi|152982364|ref|YP_001355202.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 676 Score = 115 bits (287), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 75/214 (35%), Positives = 112/214 (52%), Gaps = 4/214 (1%) Query: 215 KSHRHFIADASHELRTPLAALQI--QALVVEQSLGSGQEQAALNDLKRGIQRTSHLVNQL 272 + + FIA SHELRTPLA + Q + E GS + L + R +R S L Sbjct: 440 EEQQQFIAMVSHELRTPLAVIDAAAQNMTREGEQGSAKAPLRLEKIHRATERLSSLFTHY 499 Query: 273 LTVSRLENGALEEHHAEIDLHALVRQAVIDLLPLARSHAINLGAEQLDSTTVVAAPDQLG 332 L+ RL+ A LH L+ AV PLA +H + +E + V A D L Sbjct: 500 LSSERLKMFAHGIQPTNTTLHLLLEDAVNMAKPLADNHQFLIASEAVKKP-VRADADILR 558 Query: 333 ILVRNLIDNAVRYTPTGGQVDVSLRVVEGRALLEVEDSGPGIPVEERQRVFERFYRRQVQ 392 +++ L++NAV+YTP G V + V ++V D+GPGI +ER+++F R+YR ++ Sbjct: 559 LVISTLLNNAVKYTPAGSTVVLRAEPVSNGWHIDVTDNGPGIAADEREKIFNRYYRGRIS 618 Query: 393 QSE-GSGLGLAIVREIARQHGLRLGLDDSPRLGG 425 S+ G+GLGL + R + +HG L L D+P G Sbjct: 619 GSKAGTGLGLTLARHLIERHGGTLELLDNPAGGS 652 >gi|152980724|ref|YP_001353975.1| two-component system sensor kinase of the phosphate regulon [Janthinobacterium sp. Marseille] Length = 443 Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 124/225 (55%), Gaps = 10/225 (4%) Query: 218 RHFIADASHELRTPLAALQ--IQALVVEQSLGSGQEQAALNDLKRGIQRTSHLVNQLLTV 275 R FIA+ASHELRTPL + ++ + +L + LN + +R +LV +LT+ Sbjct: 207 RDFIANASHELRTPLTVINGFLEIAQGQPNLDPDVRMSHLNLMIEQGKRMQNLVEDMLTL 266 Query: 276 SRLENGALEEHHAEIDLHALVRQAVIDLLPLARS-HAINLGAEQLDSTTVVAAPDQLGIL 334 +RLE+ +++ L+RQ + + L+ H I+L E D + + D+L Sbjct: 267 TRLESIDYPLRPEHVNIGNLLRQILQEAEALSGGRHVISLTVEGPD---IQGSTDELRSA 323 Query: 335 VRNLIDNAVRYTPTGGQVDVSLRVVEGRALLEVEDSGPGIPVEERQRVFERFYR---RQV 391 NL+ NAVRYTP GG++D+ + V+DSG GI E R+ ERFYR + Sbjct: 324 FGNLVSNAVRYTPEGGRIDIKWQDAGNGPQFSVKDSGIGIRAEHIVRLTERFYRVDKSRS 383 Query: 392 QQSEGSGLGLAIVREIARQHGLRLGLDDSPRLGGLRVSVAFEIST 436 ++++G+GLGLAIV+ + +HG LG++ P G +V F+++T Sbjct: 384 RETQGTGLGLAIVKHVLLRHGAVLGIESQPDAGS-TFTVKFDLNT 427 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 939,428 Number of extensions: 37700 Number of successful extensions: 236 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 177 Number of HSP's successfully gapped: 27 Length of query: 462 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 375 Effective length of database: 899,382 Effective search space: 337268250 Effective search space used: 337268250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)