BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0945.p
         (758 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981049|ref|YP_001352301.1| malic enzyme [Janthinobacterium...   837   0.0  

>gi|152981049|ref|YP_001352301.1| malic enzyme [Janthinobacterium
           sp. Marseille]
          Length = 770

 Score =  837 bits (2163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/767 (55%), Positives = 554/767 (72%), Gaps = 17/767 (2%)

Query: 1   MTQHISAAEQL---LRDAAREYHRTPTRGKIEVRATKPLSNQRDLSLAYSPGVAYPCLDI 57
           M  +    E+L   LR AA EYH  PT GKI V  TK ++NQRDL+LAY+PGVA  C +I
Sbjct: 1   MDSNTDKKEELRLQLRQAALEYHEFPTPGKISVTPTKQVTNQRDLALAYTPGVAVACEEI 60

Query: 58  EADPLKAFDYTSRGNLVAVISNGTAVLGLGNIGPLASKPVMEGKGCLFKKFAGVDVFDIE 117
            A+P  ++ YT+RGNLVAVI+NGTAVLGLGNIGP A+KPVMEGKG LFKKFAG+DVFDIE
Sbjct: 61  AANPADSYRYTARGNLVAVITNGTAVLGLGNIGPAAAKPVMEGKGVLFKKFAGIDVFDIE 120

Query: 118 LAENDPDKLVEIIAALEPTLGGINLEDIKAPECFYIEQKLSARMNIPVFHDDQHGTAIIS 177
           + E DPDKL +IIA+LEPT GGINLEDIKAPECFYIE+ L  RM IPVFHDDQHGTAII 
Sbjct: 121 INETDPDKLCDIIASLEPTFGGINLEDIKAPECFYIERTLRERMKIPVFHDDQHGTAIIV 180

Query: 178 SAALLNGLELVGKDIGAVKIAVSGAGAAAIACVEVMIGLGVKRENVYMVDSKGVIYEGRP 237
           +AA+LNGL++VGKDI   K+ VSGAGAAA+AC+++M+ LG  RE++++ D  GV+Y+GR 
Sbjct: 181 AAAILNGLKVVGKDIKKAKLVVSGAGAAALACLDLMVDLGFPREHIFVTDLAGVVYQGRV 240

Query: 238 GGLDASKQRYAIKTEARTLADVVNGADVFLGCSAPGVLTAEMVKTMADKPIILALANPEP 297
             +D  K+++A KT+ARTL +V+  AD+FLG SA GVL   MV  MA +P+ILALANP P
Sbjct: 241 ELMDPDKEKFAQKTDARTLGEVIADADIFLGLSAGGVLKPAMVAAMAKRPVILALANPTP 300

Query: 298 EIRPELAKSVRPDCIIATGRSDYPNQVNNVLCFPYIFRGALDCGATKITEAMKLACVREI 357
           EI P+  ++VR D +IATGRSD+PNQVNNVLCFPYIFRGALDCGAT IT  M++A V  I
Sbjct: 301 EILPDEIRAVRDDAVIATGRSDFPNQVNNVLCFPYIFRGALDCGATTITREMEIAAVHAI 360

Query: 358 ADLAKAETSAEVSAAYPGKELVFGADYLIPTPFDSRLILKIAPAVAKAAAESGVATRPIT 417
           A LA+AE S  V+  Y    L FG DY+IP PFD RL++KIA AVAKAA E GVA RPI 
Sbjct: 361 AQLAQAEQSDIVATTYGIHNLSFGPDYIIPMPFDPRLMIKIAMAVAKAAEECGVAARPIK 420

Query: 418 DYDAYRAELTRFIYQTGMFMQPVFNTAKRAA---QRVVYADGEDERVLRAVQFVADEGLA 474
           D DAY   L +F+Y++G FM+P+F  AK      +R+VYA+ E+ERVLRAVQ V DE LA
Sbjct: 421 DMDAYADRLQQFVYRSGTFMKPIFQIAKATPPELKRIVYAEAEEERVLRAVQVVVDEKLA 480

Query: 475 APILVGRAAAIEAGIKKAGLRLKIGQNLQVIDPASDDRVAQYAAQY------QGGSEA-- 526
            PIL+GR A +   I++ GLR+K   +  +I+P  DDR   +   Y      +G +E   
Sbjct: 481 RPILIGRPAVLAQRIERFGLRIKPDVDFTIINPEHDDRYRDFWQTYLQMTMRKGVTEQYA 540

Query: 527 --DVRASSSLLAALMVKAGHADAMLCGLDGNYDGHLAHVEKVIGLKDGAQEFAALNAVLL 584
             ++R   +L+ A+ +   +AD M+CG  G  + HL +V++V+G + G   +AA+N ++L
Sbjct: 541 KLEMRRRHTLIGAMAIHKKYADGMICGTFGTNNLHLHYVDQVLGKRAGVNVYAAMNCLIL 600

Query: 585 PEQTLFITDTYVNDTPDAEQLARIAKAAAEEVARFGVPPKVAFLSHSNHGSSSRPSARKM 644
            ++ LFI DT+VN+ P AE+LA I   AAEE+ RFG+ P+ A LSHSN GSS+  SA+KM
Sbjct: 601 SDRQLFIVDTHVNENPTAEELAEITILAAEEMRRFGLAPRAALLSHSNFGSSNSESAQKM 660

Query: 645 AAAHEAFKKLAPEVESAGELHGDAALSEKIRHNAGLTDSGLTGAANVLVCPNLDAANILF 704
               +  ++ AP++E  GE+HGD AL+   +  A + DS L G AN+L+ PN+DAANI +
Sbjct: 661 RKTLQLVRERAPDLEIDGEMHGDLALNSA-QLKAAMPDSTLKGDANLLILPNIDAANITY 719

Query: 705 NVLKTSSGQGTTIGPILLGAAAPVHVLTPSSTVRRVINMTALAAAKA 751
           N+LKT+ G G  IGPILLG   PVH+LTPS+TVRR++NMTAL  A +
Sbjct: 720 NLLKTTVGNGVAIGPILLGCEKPVHILTPSATVRRIVNMTALCVADS 766


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,556,316
Number of extensions: 59891
Number of successful extensions: 233
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 1
Length of query: 758
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 668
Effective length of database: 888,291
Effective search space: 593378388
Effective search space used: 593378388
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)