BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0944.p (515 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 417 e-118 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 417 e-118 gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 399 e-112 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 396 e-111 gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis pro... 393 e-110 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 417 bits (1073), Expect = e-118, Method: Compositional matrix adjust. Identities = 264/521 (50%), Positives = 348/521 (66%), Gaps = 22/521 (4%) Query: 6 NLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQGSLPP 65 NL I+ +L+ FA+++ L ++ + I L++V ++ + +P A+E L Sbjct: 5 NLKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEW---LSA 61 Query: 66 LRLNELELVTAVTPQERSAANQAI--------KARLDALAKQRTVFEQRMSEPEEKEQYA 117 + +N T + + SA +QA R + L K+ E + PE+K + Sbjct: 62 VDVNGAR--TLASAKTTSAEDQAFFQKQMDKTSVRANELQKE---IESMIKTPEDKRLFE 116 Query: 118 QFGKNLAAYIKVDEQLAEMAANQQYDETRALFKGESAKLYAAMVANLNAIVKINTSGSAQ 177 + AY + + + ++ A + E + L + K+ AM A N+I + + Sbjct: 117 ELVVARNAYRDIRQTVFKLKAEGKLPEAQLLI---NEKMLPAMNAYSNSIDAVLQNEKKL 173 Query: 178 ADAEASGV---FRGAQRWIVGLLAATVAIGSLLAFVVAANVSRPLKEAVEIAQRVARGDL 234 D + + F + ++GLLAA VA+G A+ +A +++RPL AV +A+ VA GDL Sbjct: 174 IDEAGTSIQSAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNRAVTVARTVASGDL 233 Query: 235 TLRIRPAGRDETGRLMEALRAMNDSLRDIVSEVRQGTDTIATASNEIARGNLDLSNRTEQ 294 + +I + DETG+LM+AL+ M SL VSEVR GT+TIATAS +IA GNLDLS+RTE+ Sbjct: 234 SAKIEVSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEE 293 Query: 295 QAGSLEETASAMEQLTSTVTQNADNARQANQLAATASDIASHGGDVVGQVVQTMEGITES 354 QA SL ETA++M QLTSTV QNADNARQAN LA +ASD+A GG VV +VV TM I ES Sbjct: 294 QASSLGETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINES 353 Query: 355 SRRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEI 414 +R+I DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEI Sbjct: 354 ARKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEI 413 Query: 415 KELIDDSVQKVSAGSELVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAI 474 K LI DSV KV AGS+LV AGSTM E+V SV+RVTD++AEI AA+QEQS GI++VN AI Sbjct: 414 KILIGDSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAI 473 Query: 475 TQMDETTQQNAALVEQAAAAADSLKGQAGNLAAVVGKFKLE 515 QMD+ TQQNAALVE+AAAAA+SL+ QAGNLA VV +FKL+ Sbjct: 474 GQMDQVTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKLD 514 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 417 bits (1072), Expect = e-118, Method: Compositional matrix adjust. Identities = 274/539 (50%), Positives = 348/539 (64%), Gaps = 48/539 (8%) Query: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNK----------ASGEIVSKWM 50 MI+F N+ I +L L F VV+AL++ I++L V+ A +VS W Sbjct: 1 MIFFSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWA 60 Query: 51 PTMDA--AREL--QGSLPPLRLNELELVTAVTPQERSAANQAIKARLDALAKQRTVFEQR 106 A AR + S P L +A + S + I +L+ L Sbjct: 61 AITKASIARTIGVAKSADP----ALAQFSAKFAADDSKQSMEIIQKLEPL---------- 106 Query: 107 MSEPEEKEQYAQF---------GKNLAAYIKVDEQLAEMAANQQYDETRALFKGESAKLY 157 ++ +EKE YA+ G+ +K + + AE A +Y +T L +S K + Sbjct: 107 LNTDQEKELYAKILDVRKSFLAGREGVMKLKTEGKEAEAA---KYFDTTFLPAADSFKNH 163 Query: 158 AAMVANLNAIVKINTSGSAQ-ADAEASGVFRGAQRWIVGLLAATVAIGSLLAFVVAANVS 216 L K +G+AQ +D EA+ + R ++ L A +A G A+ + ++ Sbjct: 164 FTEFVELER--KQMDAGTAQLSDVEAA-----STRQLMLLSAMVLAFGIFCAWRLTIGIT 216 Query: 217 RPLKEAVEIAQRVARGDLTLRIRPAGRDETGRLMEALRAMNDSLRDIVSEVRQGTDTIAT 276 RPLK AV+ A+RVA GDLT I+ +DE G+L+ AL+ MND L+ IV EVR GT+TI T Sbjct: 217 RPLKTAVDAARRVAGGDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITT 276 Query: 277 ASNEIARGNLDLSNRTEQQAGSLEETASAMEQLTSTVTQNADNARQANQLAATASDIASH 336 ASNEIA GNLDLS+RTEQQA SLEETAS+ME+LTSTV QNADNARQANQLA +AS++A Sbjct: 277 ASNEIAAGNLDLSSRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALK 336 Query: 337 GGDVVGQVVQTMEGITESSRRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 396 GGDVV QVVQTM I ESSR+I DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV Sbjct: 337 GGDVVSQVVQTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 396 Query: 397 ASEVRSLAQRSAGAAKEIKELIDDSVQKVSAGSELVERAGSTMTEVVASVRRVTDVVAEI 456 A+EVRSLAQRSA AAKEIK LI DSV KV G++LV AG+TM E+V S+RRVTD++ EI Sbjct: 397 ATEVRSLAQRSASAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEI 456 Query: 457 SAATQEQSGGINEVNLAITQMDETTQQNAALVEQAAAAADSLKGQAGNLAAVVGKFKLE 515 +AA+QEQS GI ++N AI QMD TQQNA+LVE+AAAAA+S++ QA L VVG FKL+ Sbjct: 457 TAASQEQSAGIEQINQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLD 515 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 399 bits (1026), Expect = e-112, Method: Compositional matrix adjust. Identities = 267/525 (50%), Positives = 337/525 (64%), Gaps = 27/525 (5%) Query: 3 WFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVN---KASGEIVSKWMPTMDAAREL 59 F N+ + KL+L F V LTLL +FA+ + Q++ EI ++ + + ARE Sbjct: 1 MFANMKVGSKLSLGFGVTALLTLLIAVFALMRINQIDGVIATQNEIRTQQLERLYTAREA 60 Query: 60 QGSLPPLRLNELELVT-AVTPQERSAANQAIKARLDALAKQRTVFEQRMSEPEEKEQYAQ 118 G N A +E ++ LDALAK F+ A Sbjct: 61 LGQTGLAARNAYIFTNKADALKELDILDEQKAIYLDALAKMTPFFKGD----------AN 110 Query: 119 FGKNLAAYIKVDEQLAEMAANQQYDETRALFK---GESAKLYAAMVANLNAIV----KIN 171 F K + + E+L + D+ A K E + L +VA++ +V KI Sbjct: 111 FEKVSKGLLTMAEELKRPRQFRDADQMEAFGKFLVNECSPLRRQIVADIGTVVTSMQKIV 170 Query: 172 TSGSAQAD-AEASGVFRGAQRWIVGLLAATVAIGSLLAFVVAANVSRPLKEAVEIAQRVA 230 S +A+ A + V LL ++IG L V++ +++RPL EAV +AQ VA Sbjct: 171 DVKSQEANLAAQQSITIIIAISAVALL---LSIG--LGIVISRSITRPLNEAVLVAQTVA 225 Query: 231 RGDLTLRIRPAGRDETGRLMEALRAMNDSLRDIVSEVRQGTDTIATASNEIARGNLDLSN 290 GDLT +I +DETG+L++AL+ MN SL IV EVR GT T+ATASN+IA GN+DLS+ Sbjct: 226 SGDLTSQINVKSKDETGQLLQALKDMNQSLIGIVDEVRSGTATMATASNQIASGNMDLSS 285 Query: 291 RTEQQAGSLEETASAMEQLTSTVTQNADNARQANQLAATASDIASHGGDVVGQVVQTMEG 350 RTE+QA SLEETAS+ME+LTSTV QNADNARQAN L+ +AS+IA GG VV +VV TM G Sbjct: 286 RTEEQASSLEETASSMEELTSTVKQNADNARQANSLSLSASEIAVKGGQVVSEVVVTMNG 345 Query: 351 ITESSRRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGA 410 I +S+++I DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA A Sbjct: 346 INDSAKKITDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAA 405 Query: 411 AKEIKELIDDSVQKVSAGSELVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEV 470 AKEIK LIDDSV +V GS+LV +AGSTMTEVV SV+RVTD++AEI AA+QEQS GI +V Sbjct: 406 AKEIKALIDDSVGRVDTGSKLVVQAGSTMTEVVDSVKRVTDIMAEIMAASQEQSAGIEQV 465 Query: 471 NLAITQMDETTQQNAALVEQAAAAADSLKGQAGNLAAVVGKFKLE 515 N AI QMD TQQNAALVE+AAAAA SLK QA L V FK++ Sbjct: 466 NQAIAQMDHVTQQNAALVEEAAAAAGSLKDQAVKLEQTVSVFKID 510 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 396 bits (1017), Expect = e-111, Method: Compositional matrix adjust. Identities = 248/519 (47%), Positives = 351/519 (67%), Gaps = 18/519 (3%) Query: 6 NLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQGSLPP 65 NL I ++L+LSF ++ L ++ A + +N A E+ P A ++ L Sbjct: 3 NLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDLNQ 62 Query: 66 LRLNELELVTAVTPQERSAANQAIKARLDALAKQRTVFEQRMSEPEE-------KEQYAQ 118 + N + A+ E++A I+A L + K + E E+ ++ A Sbjct: 63 IARN---MRNALLMTEKAA----IQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAG 115 Query: 119 FGKNLAAYIKVDEQLAEMAANQQYDETRALFKGESAKLYAAMVANLNAIVKINTSGSAQA 178 + + ++ + + ++A+ DE AL E + +A+++ ++ ++ Sbjct: 116 LQADRSKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKS 175 Query: 179 DAEASGVFRGAQ-RWIVGLLAAT-VAIGSLLAFVVAANVSRPLKEAVEIAQRVARGDLTL 236 AEA+ + +Q + ++G+ + V I ++ A + +++RPL +AV +A++VA GDLT Sbjct: 176 GAEANA--KASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTG 233 Query: 237 RIRPAGRDETGRLMEALRAMNDSLRDIVSEVRQGTDTIATASNEIARGNLDLSNRTEQQA 296 I +DETG+L++AL+ MN+ L IV++VR GTDTIA+AS++IA GNLDLS+RTEQQA Sbjct: 234 SIVVESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQA 293 Query: 297 GSLEETASAMEQLTSTVTQNADNARQANQLAATASDIASHGGDVVGQVVQTMEGITESSR 356 SLEETAS+ME+LTSTV QNA+NARQ+NQLA +AS++A GG VV +VV TM I +S++ Sbjct: 294 SSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAK 353 Query: 357 RIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKE 416 +I DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIKE Sbjct: 354 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKE 413 Query: 417 LIDDSVQKVSAGSELVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQ 476 LI DSV KVS GS LV+ AG+TM EVV SV+RVTD+++EI+AA+QEQ+ GI ++N A+ Q Sbjct: 414 LIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQ 473 Query: 477 MDETTQQNAALVEQAAAAADSLKGQAGNLAAVVGKFKLE 515 MD+ TQQNAALVE+AAAAA+SL+GQA +L+ VVG FKL+ Sbjct: 474 MDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKLD 512 >gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 393 bits (1010), Expect = e-110, Method: Compositional matrix adjust. Identities = 260/517 (50%), Positives = 339/517 (65%), Gaps = 10/517 (1%) Query: 4 FYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIV-SKWMPTMDAARELQGS 62 N+ I +LA+ F + L + A+ + + + ++V S W+ AA + Sbjct: 3 ILNVRIGARLAMGFGAIFILMATLIVLALLRFNSIGEINHQMVDSDWVKAEAAATIDVTT 62 Query: 63 LPPLRLNELELVTAVTPQERSAANQAIKARLDALAKQRTVFEQRMSEPEEKEQYAQFGKN 122 R N +EL+ + +A I A+ + V ++ + + K +F + Sbjct: 63 RANARRN-MELLMETESAKVAALFADIAKNKKAIDEAVVVLDKLIYTDKGKALMQEFKEA 121 Query: 123 LAAYIKVDEQLAEMAANQQYDETRALFKGESAK---LYAAMVANLNAIVKINTSGSAQAD 179 Y+ ++ ++ A+ DE R + E+ + +VA L A+ K + Sbjct: 122 RGKYVASFGKVGKLVADNHRDEARQILLSETLPALDVVQGIVAQLTAVQKKMVE---ERG 178 Query: 180 AEASGVFRGAQRWIVGLLAATVAIGSL-LAFVVAANVSRPLKEAVEIAQRVARGDLTLRI 238 A A+G A + ++ +L A A+G + LA+ + ++++PL EAV+IAQ VA GDLT I Sbjct: 179 ATAAGHIDAAIQMMM-VLGALAAVGGIALAYWITHSITKPLHEAVKIAQTVAAGDLTSVI 237 Query: 239 RPAGRDETGRLMEALRAMNDSLRDIVSEVRQGTDTIATASNEIARGNLDLSNRTEQQAGS 298 +DETG+L+ AL+ MN SL IV EVR T+ IA AS +IA GN+DLS+RTE+QA S Sbjct: 238 EAKYKDETGQLLRALKDMNGSLIRIVGEVRHSTEAIAIASTQIASGNMDLSSRTEEQASS 297 Query: 299 LEETASAMEQLTSTVTQNADNARQANQLAATASDIASHGGDVVGQVVQTMEGITESSRRI 358 LEETAS+ME+LT TV QNADNARQANQLA TAS +AS GGDVV QVV TM I +S+++I Sbjct: 298 LEETASSMEELTGTVRQNADNARQANQLALTASSVASKGGDVVSQVVDTMGSINDSAKKI 357 Query: 359 ADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELI 418 ADII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEIK LI Sbjct: 358 ADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKTLI 417 Query: 419 DDSVQKVSAGSELVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMD 478 DSVQKV+AGS LV+ AGSTM EVVASVRRVTD++ EI+AA+QEQ+ GI ++N A+ QMD Sbjct: 418 GDSVQKVNAGSRLVDDAGSTMQEVVASVRRVTDIMGEITAASQEQTTGIEQINQAVIQMD 477 Query: 479 ETTQQNAALVEQAAAAADSLKGQAGNLAAVVGKFKLE 515 TQQNAALVEQAAAAA SL+ QAG+LA VVG FKL Sbjct: 478 SVTQQNAALVEQAAAAAASLQHQAGSLAQVVGVFKLH 514 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.312 0.125 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 893,590 Number of extensions: 31365 Number of successful extensions: 230 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 21 Length of query: 515 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 428 Effective length of database: 899,382 Effective search space: 384935496 Effective search space used: 384935496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)