BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0943.p (298 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 90 1e-19 gi|152981653|ref|YP_001353379.1| LysR family transcriptional reg... 86 2e-18 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 80 1e-16 gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 78 6e-16 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 77 1e-15 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 90.1 bits (222), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 119/255 (46%), Gaps = 21/255 (8%) Query: 3 ELSLDQLRTLVSIVDLGTFSAAANALHLAQPTISLHVSELEARIGAPLLMRGSRRAQPTA 62 + L QLR V++ + F AA LH+ QP +S + LEA +G L R SR T Sbjct: 2 NIELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTP 61 Query: 63 LGTILIERARRLLRDVDDLLDVAQKHVEGKVGRVRLGTSTGVVVHLLPRVLKKLESAFPG 122 G L+ A+R+L+ L D+ ++ G GR+ L + +LP L++ A+P Sbjct: 62 AGIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQ 121 Query: 123 IDVEVNILGSVETMDRLQQGTLDIGLVSTPIQKTKEIRISHWR--SDKMMAYLPASWDC- 179 +++++ + +D L QG +D+GL+ P+ ++++ + S+ ++ +P Sbjct: 122 VEIDLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAVPKGLKAV 181 Query: 180 --PATIRPAWLADKPMI---------FNDATTQMYRLTMEWFAAAGENPRARIELNYTEA 228 T+ +A+ P+I F+DA YR AG P E + Sbjct: 182 RGKQTVALQAVAELPLIIFPRRIAPAFHDAILACYR-------DAGLTPHIGQEAIQMQT 234 Query: 229 MKSLVSAGYGAAVLP 243 + LVSAG G A++P Sbjct: 235 IIGLVSAGMGIALVP 249 >gi|152981653|ref|YP_001353379.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 285 Score = 86.3 bits (212), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 112/249 (44%), Gaps = 16/249 (6%) Query: 9 LRTLVSIVDLGTFSAAANALHLAQPTISLHVSELEARIGAPLLMRGSRRAQPTALGTILI 68 LR+ V++VD G+F+ AA+++HL Q T+S + LE + LL R R T G L+ Sbjct: 7 LRSFVAVVDTGSFTRAADSVHLTQSTVSQQIRRLEEQFDCDLLNRSGRYVATTPEGESLL 66 Query: 69 ERARRLLRDVDDLLDVAQKHVEGKVGRVRLGTSTGVVVHLLPRVLKKLESAFPGIDVEVN 128 ARR+L+ +D+ ++ + VE G ++LG H L VL +PGI +E+ Sbjct: 67 GYARRILQLMDEAVEQVTQSVE--QGEIQLGVPEDFAAHALTPVLAAFAGNYPGIRLEIT 124 Query: 129 ILGSVETMDRLQQGTLDIGLVSTPIQKTKEIRISHWRSDKMMAYLPASWDCPATIRPAWL 188 S + QQG LD+ LV +K I+ W P W + RPA L Sbjct: 125 SGLSHDLYRMFQQGKLDLALVKQ--RKDSAPGIASWPE-------PLCW-VDSLNRPAAL 174 Query: 189 ADKPMIFNDATTQMYRLTM-EWFAAAGENPRARIELNYTEAMKSLVSAGYGAAVLPLEQP 247 D + +YR M A G R ++ + V G G ++LP Sbjct: 175 RDPVPLVAFPIGGLYRNEMTHALDAIGRRWRIGFVSTSLASVSAAVQDGLGISLLPRRM- 233 Query: 248 LAAELGRHK 256 A+ G+HK Sbjct: 234 --AQAGQHK 240 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 80.5 bits (197), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 131/296 (44%), Gaps = 14/296 (4%) Query: 4 LSLDQLRTLVSIVDLGTFSAAANALHLAQPTISLHVSELEARIGAPLLMRGSRRAQPTAL 63 + L LR ++ +F+ A+ +LH+ QPT+S + ++E +G L R R + T Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 64 GTILIERARRLLRDVDDLLDVAQKHVEGKVGRVRLGTSTGVVVHLLPRVLKKLESAFPGI 123 G + A+R L +VD LD + K GRV G + LP +L +PGI Sbjct: 61 GELFQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGI 120 Query: 124 DVEVNILGSVETMDRLQQGTLDIGLVSTPIQKTKEIRISHWRSDKMMAYL----PASWDC 179 + V L S E +RL G L G+ P T++I + + + + P Sbjct: 121 KITVLRLRSGEIEERLLDGDLHFGVAYAP-SSTEQINVEPLFTVPLALVVGDHHPLVGSA 179 Query: 180 PATIRPAWLADKPMIFNDATTQMYRLTMEWFAAAGENPRARIELNYTEAMKSLVSAGYGA 239 T+ + M+ ++ ++ ++ A G PR +E+N E + + V A Sbjct: 180 GITLNELNEHELVMLSDEYNSR--KMMDAILLANGITPRIVMEMNAIEPILATVRHSSLA 237 Query: 240 AVLPLEQPLAAEL-GRHKDIRIVPLSPVLRRHVGVAHRALATLDQATANVLETIRQ 294 +L L E+ G H+ VPL+P + VG+ R + L A +++TIRQ Sbjct: 238 TILSAN--LVDEMPGLHQ----VPLTPTVTHTVGLFTRRNSHLSAAARALVDTIRQ 287 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 78.2 bits (191), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 60/249 (24%), Positives = 120/249 (48%), Gaps = 11/249 (4%) Query: 4 LSLDQLRTLVSIVDLGTFSAAANALHLAQPTISLHVSELEARIGAPLLMRGSRRAQPTAL 63 ++L +L+ +V++ F AA A +AQPT+S+ + +LE +G L RG T L Sbjct: 17 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 76 Query: 64 GTILIERARRLLRDVDDLLDVAQKHVEGKVGRVRLGTSTGVVVHLLPRVLKKLESAFPGI 123 G ++ +A R+L + ++A+++ + VG RLG + +LLP ++K + P + Sbjct: 77 GAQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKTIIERVPQM 136 Query: 124 DVEVNILGSVETMDRLQQGTLDIGLVSTPIQKTKEIRISHWRSDKMMAYLPA--SWDCPA 181 + + +V+ ++ L+QG LD +V+ P + + + + + +P W Sbjct: 137 PLVLQENFTVKLLELLRQGELDAAIVALPF-PDQGLLVQPVYDEPFVVAVPKHHKWANRD 195 Query: 182 TIRPAWLADKPMI-------FNDATTQMYRLTMEWFAAAGENPRARIELNYTEAMKSLVS 234 ++ L + M+ F D ++ M F+ +G+ E + E ++ +V+ Sbjct: 196 SVSTDDLKSETMLLLGNGHCFRDQVLEVCP-EMSRFSTSGDGIARTFEGSSLETIRHMVA 254 Query: 235 AGYGAAVLP 243 +G G VLP Sbjct: 255 SGIGITVLP 263 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 77.4 bits (189), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/249 (24%), Positives = 114/249 (45%), Gaps = 6/249 (2%) Query: 1 MRELSLDQLRTLVSIVDLGTFSAAANALHLAQPTISLHVSELEARIGAPLLMRGSRRAQP 60 M + L LR V + + G + AA + + QP +S + LE +G L R R + Sbjct: 1 MSSIDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMEL 60 Query: 61 TALGTILIERARRLLRDVDDLLDVAQKHVEGKVGRVRLGTSTGVVVH-LLPRVLKKLESA 119 T G L+ AR +L V+ ++ ++ G+ GR+ +G + +H +P V++ Sbjct: 61 TESGQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQK 120 Query: 120 FPGIDVEVNILGSVETMDRLQQGTLDIGLVSTPIQKTKEIRISHWRSDKMMAYLPASWDC 179 PG+ + V + E ++ L+ LD+ + +PI +++ ++M+ LP + Sbjct: 121 SPGVIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPITHRL 180 Query: 180 P---ATIRPAWLADKPMIFN--DATTQMYRLTMEWFAAAGENPRARIELNYTEAMKSLVS 234 ++ LA+ I N + +Y + AAG +PR E + SLV+ Sbjct: 181 AQRRKSLPLTALAEDDFILNRRPSGPGLYDSVIAACRAAGFSPRVVQEAKKNLSTLSLVA 240 Query: 235 AGYGAAVLP 243 AG G +++P Sbjct: 241 AGLGVSIVP 249 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 654,428 Number of extensions: 25950 Number of successful extensions: 137 Number of sequences better than 1.0e-08: 25 Number of HSP's gapped: 135 Number of HSP's successfully gapped: 25 Length of query: 298 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 215 Effective length of database: 914,170 Effective search space: 196546550 Effective search space used: 196546550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)