BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0940.p (488 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrog... 282 3e-77 gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde deh... 194 1e-50 gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogen... 126 4e-30 >gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrogenase (NADP+) [Janthinobacterium sp. Marseille] Length = 490 Score = 282 bits (722), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 177/475 (37%), Positives = 262/475 (55%), Gaps = 19/475 (4%) Query: 18 DHFYINGQWVPPQGNDRAAVVSPATEAAVCEIALGNAGDVDRAVQAARRALPDWAATSPW 77 +H YING WV G V +PA + + ++ A + ++A+QAA A P WAA + Sbjct: 17 NHAYINGAWV--TGKASFDVNNPADGSKITDVPNLGAQETEQAIQAAHAAFPAWAAKTGK 74 Query: 78 TRAAFLGRVHALLLERSELFAQALTLEMGAPISYARTAHVP-------LAAEHLRVARDN 130 RA + L++ ++ A +T E G P+ +R + A E RV+ D Sbjct: 75 ERAGIMRIWFDLIIANADDLAALMTAEQGKPLIESRGEVIYGASFIEWFAEEAKRVSGDV 134 Query: 131 LADYPFIRPRGTTAIVREPIGVCALITPWNWPIYQITAKVGPALAAGCTVVLKPSELSPL 190 +A T +++PIGVCA ITPWN+PI IT KV PA+AAGCT+V+KP+E +PL Sbjct: 135 MAS---TWSDKRTVTIKQPIGVCASITPWNFPIAMITRKVAPAIAAGCTIVIKPAEQTPL 191 Query: 191 SALLFAEIVHDAGIPAGVFNLVNGNGAE---VGAAMSSHPQVDMVSITGSTRAGVLVAQA 247 SAL AE+ H AGIP GV N+V + + VG + S P V VS TGST G ++ + Sbjct: 192 SALAIAELAHRAGIPPGVINVVTSDSDQSIAVGKVLCSSPIVRHVSFTGSTPVGRILMEQ 251 Query: 248 AATTVKRVAQELGGKSPNLVLPDADLARAIPPGVAAAFRNMGQSCSAPTRLIVPRAMLSQ 307 A TVK++ ELGG +P +V DADL A+ + + +RN GQ+C R V ++ Sbjct: 252 CAPTVKKIGLELGGHAPFIVFDDADLDAAVVGALQSKYRNAGQTCVCTNRFYVHESIYDT 311 Query: 308 VHELALQTLAQMKVGDPSDAATTHGPLANRAQFLRVQQMIEVGMKDGARLLAGGPGRPQG 367 + A++KVG+ + GPL + +V+Q + + GA+++ GG G Sbjct: 312 FVQKLGAGAAKIKVGNGVEQGVLQGPLIDAQAVKKVEQHVSDAVSKGAKVITGGKQHALG 371 Query: 368 LEQGYYARPTIFSDVHTDMAIAQEEIFGPVLAILPYDSVEEAITIANDTVYGLGAHVQGT 427 GY+ PT+ S++ DM I EE FGPV A++ + + +EA+ ANDT +GL ++ Sbjct: 372 ---GYFYEPTVLSNISPDMLIMHEETFGPVAAVIKFKTEDEAVAAANDTDFGLASYFYSR 428 Query: 428 DKDQVRAVAARIQSGQVHLNYPAWDPQ-APFGGYKQSGNGREYGVEGMEEYMEVK 481 D +V VA +++ G V +N + APFGG KQSG GRE G+EEY+E+K Sbjct: 429 DIGRVWRVAEKLEYGMVGINTGLISNEVAPFGGVKQSGLGREGSKYGIEEYLEIK 483 >gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde dehydrogenase [Janthinobacterium sp. Marseille] Length = 505 Score = 194 bits (493), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 157/494 (31%), Positives = 251/494 (50%), Gaps = 28/494 (5%) Query: 11 LTATGRLDHFYINGQWVPPQGNDRAAVVSPATEAAVCEIALGNAGDVDRAVQAARRALPD 70 +T + ++ H YING+ G + V +PAT A ++ L + DV V A+ A P Sbjct: 1 MTTSAKIKH-YINGRLTETAGGRQQDVFNPATGEASAQVVLASDADVQAVVATAKAAAPA 59 Query: 71 WAATSPWTRAAFLGRVHALLLERSELFAQALTLEMGAPISYARTAHVPLAAEHLRVARDN 130 WA T+P RA L + L+ + + A A+T E G S A+ L V Sbjct: 60 WADTAPLKRARILFKFKDLIEKHHDDLAAAITREHGKVFSDAKGE----VTRGLEVVEFA 115 Query: 131 LADYPFIRPRGTTAI--------VREPIGVCALITPWNWPIYQITAKVGP-ALAAGCTVV 181 ++ + T I +R+P+GV A ITP+N+P + + + P ALA G T + Sbjct: 116 CGVPQLLKTQFTDNIGGGIDNWNLRQPLGVTAGITPFNFP-FMVPMWMAPVALATGNTFI 174 Query: 182 LKPSELSPLSALLFAEIVHDAGIPAGVFNLVNGNGAEVGAAMSSHPQVDMVSITGSTRAG 241 LKPSE P +L+ AE++ AG+P GVFN++ G+ V + HP V VS GST Sbjct: 175 LKPSERDPSPSLMVAELLQQAGLPDGVFNVLQGDKLAVDGLL-QHPDVKAVSFVGSTPIA 233 Query: 242 VLV-----AQAAATTVKRVAQELGGKSPNL-VLPDADLARAIPPGVAAAFRNMGQSCSAP 295 + A+ + RV Q LGG +L V+PDA+L +A+ + AA+ + G+ C A Sbjct: 234 EYIYATGAARKGGSYPLRV-QALGGAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAI 292 Query: 296 TRLIVPRAMLSQVHELALQTLAQMKVGDPSDAATTHGPLANRAQFLRVQQMIEVGMKDGA 355 + + + ++ + + +KV + +A GP+ + A +++ I+ G+K GA Sbjct: 293 SVAVAVGDIADKLVAALIPRVKSLKVKNGMEADAEMGPVVSAAHKAKIEGYIDAGVKAGA 352 Query: 356 RLLAGGPG-RPQGLEQGYYARPTIFSDVHTDMAIAQEEIFGPVLAILPYDSVEEAITIAN 414 +LL G G + G ++G++ +F V +M I QEEIFGPVL +L + A+ + N Sbjct: 353 KLLVDGRGLKVAGHDKGFFLGGCLFDHVTPEMTIYQEEIFGPVLCVLRVPNFAAALELIN 412 Query: 415 DTVYGLGAHVQGTDKDQVRAVAARIQSGQVHLNYPAWDPQA--PFGGYKQS--GNGREYG 470 +G G + +D + R + R++ G V +N P P A FGG+K+S G+ YG Sbjct: 413 RHEFGNGVSLFTSDGNTAREFSRRVEVGMVGINVPIPVPMAWHSFGGWKRSMFGDTHAYG 472 Query: 471 VEGMEEYMEVKSIL 484 EG++ Y KSI+ Sbjct: 473 EEGIKFYTRYKSIM 486 >gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase [Janthinobacterium sp. Marseille] Length = 1242 Score = 126 bits (316), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 134/493 (27%), Positives = 216/493 (43%), Gaps = 54/493 (10%) Query: 5 LSPLAHLTATGRLDHFYINGQW--VPPQGNDRAAVV---SPATEAAVC-EIALGNAGDVD 58 LS L G+ + Y QW P +A + +PA A V + +A ++ Sbjct: 565 LSDEITLRELGKALNTYTRWQWRAAPSCTQVSSACIEVRNPANHADVVGTVQQADAAVLE 624 Query: 59 RAVQAARRALPDWAATSPWTRAAFLGRVHALLLERSELFAQALTLEMGAPISYARTAHVP 118 A+Q A + W A RAA +LL+ ++LF Q T E+ A + +P Sbjct: 625 LALQHATSGINTWQAKPIAERAA-------ILLQAADLFQQHAT-ELIALLVREAGKTLP 676 Query: 119 LAAEHLRVARDNLADYPFIRPRGTTAIV---REPIGVCALITPWNWPIYQITAKVGPALA 175 A LR A D F+R AI +P+G+ A I+PWN+P+ T +V ALA Sbjct: 677 NAIGELREAID------FLRYYSAQAIASDANQPLGLVACISPWNFPLSIFTGQVSAALA 730 Query: 176 AGCTVVLKPSELSPLSALLFAEIVHDAGIPAGVFNLVNGNGAEVGAAMSSHPQVDMVSIT 235 A V+ KP+E +PL A +++H AG+P + G+G +GA + + P+V V T Sbjct: 731 AANVVLAKPAEQTPLIACRAVQLLHQAGVPENALLFLPGSGETIGAQLVTDPRVSAVVFT 790 Query: 236 GSTRAGVLVAQAAATTVKRVAQ-------------ELGGKSPNLVLPDADLARAIPPGVA 282 GST Q A + +++ Q E GG++ +V A + + ++ Sbjct: 791 GST-------QVAQSIQRKLVQRSISEGKDIPLIAETGGQNTMIVDSSALCEQVVRDVIS 843 Query: 283 AAFRNMGQSCSAPTRLIVPRAMLSQVHELALQTLAQMKVGDPSDAATTHGPLANRAQFLR 342 +AF + GQ CSA L + + Q ++ + ++++G P AT GP+ + Sbjct: 844 SAFDSAGQRCSALRVLCLQDDIAEQTLQMLHGAMQELRIGRPDHLATDVGPVIDAEAQAH 903 Query: 343 VQQMIEVGMKDGARLLAGGPGRPQGLEQGYYARPTIFSDVHTDMAIAQEEIFGPVLAILP 402 +Q I G ++ P + G + P I D+ Q E+FGPVL +L Sbjct: 904 LQAYIRQAQAAGKQV----RQLPLPVTNGSFVAPCIIEI--ADINELQREVFGPVLHVLR 957 Query: 403 Y--DSVEEAITIANDTVYGLGAHVQGTDKDQVRAVAARIQSGQVHLNYP---AWDPQAPF 457 Y D + + + N T +GL + + + V Q G +++N A PF Sbjct: 958 YRRDDLPQLLMDINSTGFGLTLGIHTRIDETIDYVVRHAQVGNIYVNRNIVGAVVGVQPF 1017 Query: 458 GGYKQSGNGREYG 470 GG SG G + G Sbjct: 1018 GGEGLSGTGPKAG 1030 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.133 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,127,338 Number of extensions: 46962 Number of successful extensions: 178 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 3 Length of query: 488 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 401 Effective length of database: 899,382 Effective search space: 360652182 Effective search space used: 360652182 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)