BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0938.p (311 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980272|ref|YP_001353541.1| LysR family transcriptional reg... 182 2e-47 gi|152980832|ref|YP_001354031.1| LysR family transcriptional reg... 182 2e-47 gi|152979810|ref|YP_001352746.1| LysR family transcriptional reg... 180 1e-46 gi|152981563|ref|YP_001352068.1| LysR family transcriptional reg... 135 2e-33 gi|152982683|ref|YP_001354316.1| LysR family transcriptional reg... 107 1e-24 >gi|152980272|ref|YP_001353541.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 308 Score = 182 bits (463), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 111/306 (36%), Positives = 167/306 (54%), Gaps = 13/306 (4%) Query: 1 MLQLDDMQLLRALGSASSLAAAARLLDLTPPAVTVRLQRIEDRIGVRVANRATRGIALTD 60 M + D+ L SLAAAA+ L +TPP+V+ RL IE R+ VR+ NR TR I+LT Sbjct: 1 MDGISDLAFFSLLVKRGSLAAAAQELGVTPPSVSKRLAGIESRLRVRLLNRTTRRISLTP 60 Query: 61 EGQRLVQEAMDILERIESITARVSHESDRGGQASVSGTLRVVAPFGFGRRYVAPLVRDLH 120 EG+ + + ++ +E++ R+S GG + G L+V A FGFGRR++ P + Sbjct: 61 EGEIYLADGTRLVAELEALEQRIS-----GGNITAKGLLKVSATFGFGRRHITPQLSAFA 115 Query: 121 RTHPNLVISLLLAESPLA-VATGADAVISIGQVKGSSWIGHFLAPNERFLCASPALARRM 179 R +P + + L L + P+ V G DA I GQ+ + +A N R +CASPA ++ Sbjct: 116 RLYPEVEVQLHLTDRPVNLVEQGFDADIRFGQIPDARLSARKIADNRRLVCASPAYLQKH 175 Query: 180 SRLKHPSELTEYPYLCLRENDDDVSRLRFSPVDSTGRRQGKALTVRLSGALSSNDGTITR 239 P +L ++ + LRE+D+ FS +G +Q TV++ GALS+NDG Sbjct: 176 GTPLVPRDLQQHNCILLRESDEIYGSWHFS----SGIKQE---TVKVRGALSANDGECAT 228 Query: 240 DWALDGLGFVARSEWDCAHLVAEGSLKRVLPGWHLEPAPIMALLPSRQGLTTRQRVFLEA 299 WALDG G V RSEWD A + G L+ VL W L A I + P++ L+ + R ++ Sbjct: 229 SWALDGQGIVVRSEWDVAPYLRSGRLRAVLEEWQLPQADIYIVFPTKNHLSAKTRALVDF 288 Query: 300 AKRAFQ 305 +AF+ Sbjct: 289 MLQAFE 294 >gi|152980832|ref|YP_001354031.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 182 bits (463), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/305 (37%), Positives = 159/305 (52%), Gaps = 13/305 (4%) Query: 1 MLQLDDMQLLRALGSASSLAAAARLLDLTPPAVTVRLQRIEDRIGVRVANRATRGIALTD 60 M L D+ L SLAA AR L +TPPAVT RL +E R+GVR+ NR TR +++T Sbjct: 1 MNDLSDLAFFSVLVKQGSLAAVARELGVTPPAVTKRLANLEQRLGVRLLNRTTRTMSVTH 60 Query: 61 EGQRLVQEAMDILERIESITARVSHESDRGGQASVSGTLRVVAPFGFGRRYVAPLVRDLH 120 EG+ + E IL IE + VS +A G LR+ A FGFGRR++AP V D Sbjct: 61 EGEIYLAEGARILTEIEELERAVSR-----SRAVPKGLLRINATFGFGRRHIAPAVSDFI 115 Query: 121 RTHPNLVISLLLAESPLAVATGA-DAVISIGQVKGSSWIGHFLAPNERFLCASPALARRM 179 +P + + L L++ P + A D I IG++ + I +A N R LCA+PA +R Sbjct: 116 EKYPEIEVQLQLSDRPANLIDQAFDIGIRIGEMPDARIIARKIAANRRLLCAAPAYIKRH 175 Query: 180 SRLKHPSELTEYPYLCLRENDDDVSRLRFSPVDSTGRRQGKALTVRLSGALSSNDGTITR 239 P +L + + LREND G+RQ ++++ GALSSNDG T Sbjct: 176 GTPSVPRDLQKLQCIVLRENDAAYGSWHL----HKGKRQE---SIKVRGALSSNDGETTL 228 Query: 240 DWALDGLGFVARSEWDCAHLVAEGSLKRVLPGWHLEPAPIMALLPSRQGLTTRQRVFLEA 299 WAL G G + RS+WD A + G L VL W L P+ I A+ P R L+ + F++ Sbjct: 229 AWALAGHGILMRSQWDVAAYLRSGRLVEVLADWSLPPSDIYAVYPERLNLSAKVTAFVDF 288 Query: 300 AKRAF 304 F Sbjct: 289 VSARF 293 >gi|152979810|ref|YP_001352746.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 361 Score = 180 bits (456), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 107/294 (36%), Positives = 158/294 (53%), Gaps = 13/294 (4%) Query: 6 DMQLLRALGSASSLAAAARLLDLTPPAVTVRLQRIEDRIGVRVANRATRGIALTDEGQRL 65 +++ + +L+AAAR LD+TPPA T RL ++E R+GVR+ NR TR I+LT EG+ Sbjct: 64 ELEFFVLIARLGNLSAAARALDITPPAATKRLAQLESRLGVRLVNRTTRSISLTSEGEIY 123 Query: 66 VQEAMDILERIESITARVSHESDRGGQASVSGTLRVVAPFGFGRRYVAPLVRDLHRTHPN 125 + A IL ++ + VS G + G LRV A GFGR +APLV + R +P Sbjct: 124 LGYAARILAEVKEMEDAVS-----SGGGAPRGLLRVNATLGFGRTAIAPLVSEFVRRYPQ 178 Query: 126 LVISLLLAESPL-AVATGADAVISIGQVKGSSWIGHFLAPNERFLCASPALARRMSRLKH 184 + + +++ P+ V G D I G + + L N RFLCASP R + Sbjct: 179 VEVQFEVSDKPIDLVENGFDLAIRFGTLPDTRLNARKLMSNRRFLCASPIYLERHGTPQT 238 Query: 185 PSELTEYPYLCLRENDDDVSRLRFSPVDSTGRRQGKALTVRLSGALSSNDGTITRDWALD 244 ++L+ + + R+ND+ + RF+ R G+ +++ ALSSNDG I WALD Sbjct: 239 LADLSRHRCITHRQNDEAAATWRFT-------RDGRNEVIKVESALSSNDGDIVLGWALD 291 Query: 245 GLGFVARSEWDCAHLVAEGSLKRVLPGWHLEPAPIMALLPSRQGLTTRQRVFLE 298 G + RSEWD A V G LK VLP + L A + P+R+ +TR R F++ Sbjct: 292 AHGILIRSEWDLAKYVKSGRLKIVLPDYVLPSADLFVYYPNRRNQSTRARAFID 345 >gi|152981563|ref|YP_001352068.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 135 bits (341), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 93/313 (29%), Positives = 152/313 (48%), Gaps = 17/313 (5%) Query: 4 LDDMQLLRALGSA---SSLAAAARLLDLTPPAVTVRLQRIEDRIGVRVANRATRGIALTD 60 +D ++ + A A +S AAAA L +TP V R+ +E R+GVR+ +R+TR +ALT+ Sbjct: 1 MDKLKQIEAFVMAVEHNSFAAAALALQVTPVMVGRRIDTLEKRLGVRLLHRSTRRLALTE 60 Query: 61 EGQRLVQEAMDILERIESITARVSHESDRGGQASVSGTLRVVAPFGFGRRYVAPLVRDLH 120 EG ++ +L +E + +S G V+G L V AP FGR++VAP ++ Sbjct: 61 EGSVYLEHCRKMLNELEHAESALS-----AGHNKVTGHLIVSAPASFGRQHVAPYAQEFL 115 Query: 121 RTHPNLVISLLLAESPL-AVATGADAVISIGQVKGSSWIGHFLAPNERFLCASPALARRM 179 HP L +S L + + V G D I IG +++ LA N+R +C + ++ Sbjct: 116 EQHPGLKMSFNLTDRVVDLVQEGYDMGIRIGGNIDPNFVAIKLAANKRVVCGTREYFKKH 175 Query: 180 SRLKHPSELTEYPYLCLRENDDDVSRLRFSPVDSTGRRQGKALTVRLSGALSSNDGTITR 239 + K +L + L F+ +GK ++VR G+L NDG + Sbjct: 176 GKPKTLDDLANHNCLSFNLQGGQQRGWYFN-------YRGKTVSVRAQGSLDCNDGELLH 228 Query: 240 DWALDGLGFVARSEWDCAHLVAEGSLKRVLPGWHLEPAPIMALLPSRQGLTTRQRVFLEA 299 W +GLG RS W+ + G L+ VL + + IMA+ P ++ + + R+F+ Sbjct: 229 RWMTEGLGIAWRSVWEIQRQLESGMLETVLDDYAIPEYDIMAVYPQQRNVPAKVRLFISH 288 Query: 300 AKRAF-QPVPWRR 311 K + QP W R Sbjct: 289 LKAMYSQPGYWSR 301 >gi|152982683|ref|YP_001354316.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 299 Score = 107 bits (266), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 142/303 (46%), Gaps = 20/303 (6%) Query: 1 MLQLDDMQLLRALGSASSLAAAARLLDLTPPAVTVRLQRIEDRIGVRVANRATRGIALTD 60 M +LD++++ A+ + SL AA+R L +PPA+T L +E+RIG R+ R TR + T+ Sbjct: 1 MDRLDELEIFIAILDSGSLVAASRKLRRSPPAITRALGTLEERIGTRLIERTTRHLVATE 60 Query: 61 EGQRLVQEAMDILERIESITARVSHESDRGGQASVSGTLRVVAPFGFGRRYVAPLVRDLH 120 G L Q+A +L E A + GTL+V AP FGRR+VAP+V Sbjct: 61 AGLHLAQQARRLLADYEQTV-------QEDASAPLRGTLKVTAPVVFGRRHVAPIVNSYL 113 Query: 121 RTHPNLVISLLLAESPL-AVATGADAVISIGQVKGSSWIGHFLAPNERFLCASPALARRM 179 +P + + L+ + L + G D + IG + +S + + + L ASP R Sbjct: 114 DQYPEMRVELITNDRNLDLIEEGIDVGVRIGSLADTSMVARRVGQVQSVLVASPDYIERR 173 Query: 180 SRLKHPSELTEYP--YLCLRENDDDVSRLRFSPVDSTGRRQGKALTVRLSGALSSNDGTI 237 K +++ + + +RE RF GR Q ALT RL ++ D + Sbjct: 174 GEPKSIADIAHHDVIFTAIREK---APEWRFR---HNGREQIVALTPRL--IVNEIDAVL 225 Query: 238 TRDWALDGLGFVARSEWDCAHLVAEGSLKRVLPGWHLEPAPIMALLPSRQGLTTRQRVFL 297 A GL V + A + G+L RVLP P+ ++PS + + + R FL Sbjct: 226 LAAKAGRGLARVL--SYQVADELQAGTLLRVLPKLDAPDLPVQLIVPSARLMAPKSRAFL 283 Query: 298 EAA 300 + A Sbjct: 284 DLA 286 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 683,666 Number of extensions: 28363 Number of successful extensions: 181 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 20 Length of query: 311 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 228 Effective length of database: 914,170 Effective search space: 208430760 Effective search space used: 208430760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)