BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0934.p (298 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981284|ref|YP_001353093.1| ABC-type oligopeptide transport... 129 2e-31 gi|152981210|ref|YP_001355210.1| ABC-type dipeptide/oligopeptide... 100 8e-23 gi|152981314|ref|YP_001351949.1| ABC-type transport systems, per... 89 4e-19 gi|152981281|ref|YP_001352896.1| ABC-type uncharacterized transp... 65 7e-12 >gi|152981284|ref|YP_001353093.1| ABC-type oligopeptide transport systems, permease component [Janthinobacterium sp. Marseille] Length = 298 Score = 129 bits (325), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 99/292 (33%), Positives = 151/292 (51%), Gaps = 26/292 (8%) Query: 17 PDAIAPA-PTTAP---KRVRRHSNMAWIGMG---IVGFWILMAILGPSISPYDAT--AIV 67 P A P PT A +V R + MG +V + A+ P ++P D +++ Sbjct: 9 PQAAVPVLPTPARGYWSKVLRQLMRDPVAMGAALVVFLIVCAAVFAPWLAPMDPYKGSMI 68 Query: 68 DTDVFTGMSHKFLLGTDYLGRDMLSRILFGTRATIGLALVSTVLASLS-GTAIALFAAFS 126 + G S +LLGTD LGRDMLSR+++G R ++ L V+ VLA+ GT+I L A + Sbjct: 69 KRLLPIG-SEGYLLGTDELGRDMLSRLMYGGRLSL-LMGVTPVLAAFGIGTSIGLLAGYV 126 Query: 127 GGWRDALISRALDALISIPSKMFALMMVATFGSSMGLLVLTAAITYMPGAFRIARSLAVN 186 GG + +I R LD + PS + A+ + G M +L + ++P R+A S+ Sbjct: 127 GGRLNMIIMRVLDVFYAFPSVLLAVAISGALGPGMTNSILALTLVFVPQVVRVAESVTTQ 186 Query: 187 VQAMEYVQAARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLS-------GLSF 239 V+ ++Y++AAR G + I+ V +L N++ PV FVY LLS GLSF Sbjct: 187 VRKLDYIEAARMSGASAFSIIRVHVLGNVLGPV-------FVYATGLLSVSMILAAGLSF 239 Query: 240 LSLGVQPPDADWGSLVRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLR 291 L LGV+PP+ +WG ++ S + +P L I +IG NLL D +R Sbjct: 240 LGLGVKPPEPEWGLMLNTLRSAIFRNPWVAALPGLLIFITSIGFNLLADGVR 291 >gi|152981210|ref|YP_001355210.1| ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Janthinobacterium sp. Marseille] Length = 301 Score = 100 bits (250), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 137/277 (49%), Gaps = 14/277 (5%) Query: 29 KRVRRH---SNMAWIGMGIVGFWILMAILGPSISPYDATAIVDTDVF--------TGMSH 77 +R R+ S +A +G I+ +L A+ P I+P + + D+ + H Sbjct: 15 RRFSRNFFASKVATLGFIILLLIVLAAVFAPVIAPQNPYDLAQIDIMDSRLEPGKQNIDH 74 Query: 78 K--FLLGTDYLGRDMLSRILFGTRATIGLALVSTVLASLSGTAIALFAAFSGGWRDALIS 135 ++LGTD GRDMLS IL+G R +I + +VST +A L G + LFA + GG ++LI Sbjct: 75 SLTYVLGTDEQGRDMLSAILYGVRISIIVGVVSTAIALLIGLTLGLFAGYFGGRIESLIM 134 Query: 136 RALDALISIPSKMFALMMVATFGSSMGLLVLTAAITYMPGAFRIARSLAVNVQAMEYVQA 195 R D +S P + AL+++A G +G +++ R ARS A+ + EY++A Sbjct: 135 RIADIQLSFPPILVALILLALMGPGIGKIIIALVAVQWAYYARTARSAALVERKKEYIEA 194 Query: 196 ARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSLV 255 A G + +LPN + P++ L+ + L + LSFL +G+ + G L+ Sbjct: 195 ATGLGLSPLRTVFHHLLPNCLPPLIVIAALQVASAISLEATLSFLGIGLPVTEPSLGLLI 254 Query: 256 RENISGLGEGALAV-IMPALAIASLTIGVNLLIDNLR 291 + G + + P +A+ + +NL+ D LR Sbjct: 255 ANGFDYMMSGKYWISLFPGIALLLTVVAINLVADQLR 291 >gi|152981314|ref|YP_001351949.1| ABC-type transport systems, permease component [Janthinobacterium sp. Marseille] Length = 303 Score = 89.0 bits (219), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 121/254 (47%), Gaps = 5/254 (1%) Query: 47 FWILMAILGPSI-SPYDATAIVDTDVFTGMSHKFLLGTDYLGRDMLSRILFGTRATIGLA 105 ++++A L PS+ + D A + F S LGTD GRD+ +R+++G + ++ + Sbjct: 50 LFLIVATLQPSLLTSNDPLAASAREAFRAPSAAHWLGTDENGRDVWTRLIYGVQPSLLMG 109 Query: 106 LVSTVLASLSGTAIALFAAFSGGWRDALISRALDALISIPSKMFALMMVATFGSSMGLLV 165 L +T + G A+ LFA D + R +D L++ P + AL+++ +G + V Sbjct: 110 LAATAIGLSIGIAVGLFAGLGHRIIDNFLMRLIDVLLAFPDLLLALVIITFWGQGLVNAV 169 Query: 166 LTAAITYMPGAFRIARSLAVNVQAMEYVQAARARGEGVWYIMTVEMLPNMIRPVLADFGL 225 + + +P R+ R+ V+ +YV+AA G ++ +LPN I+P+L + Sbjct: 170 IAVGVASVPRYARMVRAQTHIVRNAQYVEAAVTLGLRRSTVIIRHVLPNAIKPILILATI 229 Query: 226 RFVYVVLLLSGLSFLSLGVQPPDADWGSLVRENISGLGEGALAVIMPALAIASLTIGVNL 285 + + LSFL G PP +WGS++ + L V P +A+ + + Sbjct: 230 GIGGKIAAGAALSFLGFGAPPPSPEWGSMLSVGRNFLSNAWWLVAAPGVAVTLTVVSITA 289 Query: 286 LIDNL----RGKRA 295 L L GKRA Sbjct: 290 LGRELLLRSEGKRA 303 >gi|152981281|ref|YP_001352896.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] Length = 347 Score = 64.7 bits (156), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 87/182 (47%) Query: 81 LGTDYLGRDMLSRILFGTRATIGLALVSTVLASLSGTAIALFAAFSGGWRDALISRALDA 140 LGTD GRD+++R+L+G R ++ L T L G + G D R ++ Sbjct: 129 LGTDDRGRDVVARLLYGFRVSVLFGLALTFTGVLLGLITGAIQGYFAGKTDLFFQRFMEI 188 Query: 141 LISIPSKMFALMMVATFGSSMGLLVLTAAITYMPGAFRIARSLAVNVQAMEYVQAARARG 200 ++P ++ + F S+GLL++ ++ R+ + + +EYVQAARA G Sbjct: 189 WGAMPELYLLIIFASIFQPSIGLLLILLSLFGWMSLSDYVRADFLRNRNLEYVQAARALG 248 Query: 201 EGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSLVRENIS 260 I+ +LPN + PV+ R +L L+ L FL LGV P A G L+ + + Sbjct: 249 LSNGQIIWRHVLPNSLTPVVTFLPFRMSGAILALTSLDFLGLGVPPSTASLGELLAQGKN 308 Query: 261 GL 262 L Sbjct: 309 NL 310 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 568,739 Number of extensions: 20020 Number of successful extensions: 129 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 126 Number of HSP's successfully gapped: 4 Length of query: 298 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 215 Effective length of database: 914,170 Effective search space: 196546550 Effective search space used: 196546550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)