BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0932.p (540 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982591|ref|YP_001355212.1| ABC-type transport system, peri... 95 1e-20 gi|152982644|ref|YP_001353091.1| ABC-type transport system, peri... 92 7e-20 >gi|152982591|ref|YP_001355212.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 522 Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 116/455 (25%), Positives = 187/455 (41%), Gaps = 60/455 (13%) Query: 75 SSTSDTLDPAKTGHATDYARVNMFYNGLTKLD--GKLAPQMVLAEEMITTDAITWIVKLK 132 S+ +LDP A + A + ++ L +D GKL P LA DA TW KL+ Sbjct: 33 SADVSSLDPHYLNIAPNVAFSSHIFDALVNVDANGKLVPG--LATSWRAVDATTWEFKLR 90 Query: 133 KGVVFHDGKPLTPADVVYSIMR------HKDPATASKVKVVADQFESVKATGPNEVQIKL 186 V FHDG T DVV+S+ R P TA +++A + + ++L Sbjct: 91 HDVKFHDGSKFTAEDVVFSLDRPAKLTNSPGPYTAYTKQIIAKKIV-------DPYTVRL 143 Query: 187 TSANADLPVILSTAQFLIV------RDGTTNFSTAN---GTGAFKLKEFTPGVRTIAVRN 237 ++A P+ L + IV + T +F++ GTG +K F G R RN Sbjct: 144 STATPYGPLALDVSAIFIVSKKAAEKASTEDFNSGKALIGTGPYKFVSFKRGDRIEVARN 203 Query: 238 ENYWKPGLPYLDEVELFGIPDEAARVNALLSGDVHWINDVNSRSTGRVKSTPGYTVMETK 297 E YW G D+V I + A R+ ALLSGDV I V + ++K + + + Sbjct: 204 EQYWG-GKSDWDKVSFRIITNSAPRLAALLSGDVDAIEGVPTADLSKLKGNAKFKLEQKI 262 Query: 298 SGQYTDLVMRQ---------DVA-------PGNNMDFTLGMKYLLDREQIKMAAFRGFAV 341 S + + Q D A P ++ + ++R+ + G AV Sbjct: 263 SWRTIFWEIDQSERSSRYVTDKAGKPLPKNPLRDIRVRQAISKAINRQALVDRTMEGLAV 322 Query: 342 IANDQPIDPTNRFYFAGLPQRPYDPDKAKFHLQKAGVLGSTIPIVASVAATGSVDMAVL- 400 A++ + P Y L YDP+ AK L +AG + + D V+ Sbjct: 323 PASNI-VAPGLLGYNDALKVEAYDPEGAKKLLAEAGYPNGFVLTLHGPNDRYINDAQVVQ 381 Query: 401 -MQQSAAKIGLKLDVKRVPPDGYWSN----QWMKVPVGFGNINPRPSADILLTQFFKSD- 454 + Q +IG++ V+ +P Y+S ++ +G+G + + D L + Sbjct: 382 TVAQFLNRIGIQTKVETLPLSVYFSKARAGEFSVALLGWGTL----AGDFGLRTLVGTSN 437 Query: 455 -----AQWNESGWKNPQFDQLVVAARGETDFNKRK 484 WN + NP D+L+ A+ G D KR+ Sbjct: 438 PDIGWGTWNWGKYSNPALDKLIAASLGSVDQAKRE 472 >gi|152982644|ref|YP_001353091.1| ABC-type transport system, periplasmic component [Janthinobacterium sp. Marseille] Length = 535 Score = 92.4 bits (228), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 129/474 (27%), Positives = 198/474 (41%), Gaps = 49/474 (10%) Query: 86 TGHATDYARVNMFYNGLTKLDGKLAPQMVLAEEMITTDAITWIVKLKKGVVFHDGKPLTP 145 TGH T Y + + + GKL P + ++ D W+ L+KGV FHDG Sbjct: 56 TGH-TIYDPLIAWEANIGTRPGKLIPGLATEWKVDPKDQKKWLFTLRKGVKFHDGSDFKA 114 Query: 146 ADVVYS---IMRHKDP----ATASKVKVVADQFESVKATGPNEVQIKLTSANADLP---- 194 VV++ ++ K P +++V+ S + V+I +A P Sbjct: 115 DAVVWNLDKVLNDKSPQFDAKQSAQVRPRIPSIVSYRKVNDYAVEITTKEIDALFPYQLP 174 Query: 195 --VILSTAQFLIV-RDGTTNFSTANGTGAFKLKEFTPGVRTIAVRNENYW-KPGLPYLDE 250 +I S AQ+ V RD S A+GTG FKL + P R V+N YW K L D Sbjct: 175 WFLISSPAQWEKVGRDWNKFASQASGTGPFKLDKLVPRERAELVKNAGYWDKSRLAQTDR 234 Query: 251 VELFGIPDEAARVNALLSGDVHWINDVNSRSTGRVKSTPGYTVMETKSGQYTDLVMRQDV 310 V L IPD R NALL+G V I ++KS+ V + Q Sbjct: 235 VILLPIPDALTRANALLNGQVDIIETPPPDVLPQLKSSGFKLVTNVTPHVWPYHFSTQPG 294 Query: 311 APGNNMDFTLGMKYLLDREQIKMAAFRGFAVIANDQPIDPTNRFYFAGLPQRPYDPDKAK 370 +P ++ +DR I +A G AV A Q +DPT+ ++ + YD A+ Sbjct: 295 SPWTDIRVRKAANLAVDRSGI-VALMNGLAVPAYGQ-LDPTSPWFGKPTFKIKYDLAAAR 352 Query: 371 FHLQKAGVLGS---TIPIVASVAATG---SVDMAVLMQQSAAKIGLKLDVKRVPPDGYWS 424 + +AG S IV + TG S+ M +QQS A+IG+++ + V + + Sbjct: 353 ALMAQAGYSPSKPLKAKIVIAQGGTGQMLSLPMNEYIQQSLAEIGIQVQFEVVELETLYL 412 Query: 425 NQWMK------------VPVGFGNINPRPSADILLTQFFKSDAQW------NESGWKNPQ 466 + W + G + P LT+F +D+++ N GW NP+ Sbjct: 413 H-WRSGAKGDINAGKGITAINLGYVTADPF--YALTRF--ADSRYVAPNGVNWGGWSNPK 467 Query: 467 FDQLVVAARGETDFNKRKAMYADL-QTMIHEKCGLGIPVFIINLEGISTKVKGI 519 D + R D + + A + Q M+ + L + V +N IS KVKG Sbjct: 468 VDAELDQIRTTFDVKAQDKLLAQVHQAMVDDALMLWV-VHDVNPHVISPKVKGF 520 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,348,116 Number of extensions: 58555 Number of successful extensions: 176 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 171 Number of HSP's successfully gapped: 2 Length of query: 540 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 452 Effective length of database: 895,685 Effective search space: 404849620 Effective search space used: 404849620 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)