BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0929.p (308 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982822|ref|YP_001355375.1| D-isomer specific 2-hydroxyacid... 72 6e-14 gi|152980390|ref|YP_001352411.1| 2-hydroxyacid dehydrogenase [Ja... 70 2e-13 gi|152982514|ref|YP_001355351.1| formate dehydrogenase [Janthino... 64 1e-11 gi|152982997|ref|YP_001354733.1| glycerate dehydrogenase [Janthi... 58 7e-10 >gi|152982822|ref|YP_001355375.1| D-isomer specific 2-hydroxyacid dehydrogenase [Janthinobacterium sp. Marseille] Length = 323 Score = 71.6 bits (174), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 22/234 (9%) Query: 54 QRFPNLEILFSVGAGIDQFDMSILPPELPVVRMTEPGIVAGM------VQYVTHAVLGLH 107 ++ PNL+++ G D LP IV G+ + ++ Sbjct: 65 EKLPNLKLIAQTGKVSGHID-------LPAAAARGITIVEGVGDPTAPAELTWTLIMAAM 117 Query: 108 REARLYARQQRQQVWQAHRVRPASAC--------RVGVLGLGMLGRAVLQQLQGLGFPCA 159 R+ Y + +WQ + PA + + G G +G+ + + G Sbjct: 118 RKLPQYVNNLKDGLWQIASMSPARNTLGTALKGRTLAIWGYGRIGQMIAAYGKAFGMDVM 177 Query: 160 GWSRSAHQLEGI-TCYSGSAGLRDFLARTDVLVCLLPLTDDTRGLLCRELFAQLPRGAAL 218 W R A + Y ++ + F + DVL L L D TRG++ + A++ A Sbjct: 178 VWGRPASCEAAVRDGYRAASSQQAFFSEADVLTLHLRLNDATRGIVTADDLARMKPQALF 237 Query: 219 VNVGRGGHLVEDDLLAALQEGQLSAAVLDVCQTEPLPADHPFWSHPDIVLTPHI 272 VN R + D L AAL++G+ A LDV + EPLP P +++ +PH+ Sbjct: 238 VNTSRAELVATDALQAALEQGRPGYAALDVFENEPLPPGSPLLRMENVLASPHL 291 >gi|152980390|ref|YP_001352411.1| 2-hydroxyacid dehydrogenase [Janthinobacterium sp. Marseille] Length = 327 Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 5/146 (3%) Query: 135 VGVLGLGMLGRAVLQQLQGLGFPCA--GWSRSAHQLEGITCYSGSAGLRDFLARTDVLVC 192 +G+LG+G +G+A+ ++ G SR+ + E + + L D L+ Sbjct: 149 LGILGMGRIGQAIARRSTGFDMNVIYHNRSRATPEQEAYANNARYVSKEELLRSADHLIL 208 Query: 193 LLPLTDDTRGLLCRELFAQLPRGAALVNVGRGGHLVEDDLLAALQEGQLSAAVLDVCQTE 252 +LP + T ++ A + A LVN+ RGG + + L+AAL+E ++++A LDV + E Sbjct: 209 VLPYSPQTHHIIGAAELALMKPTATLVNIARGGIVDDVALIAALRENRIASAGLDVFENE 268 Query: 253 PLPADHP-FWSHPDIVLTPHIASMTQ 277 PA HP F + ++VLTPHI S ++ Sbjct: 269 --PALHPDFLTLSNVVLTPHIGSGSE 292 >gi|152982514|ref|YP_001355351.1| formate dehydrogenase [Janthinobacterium sp. Marseille] Length = 400 Score = 63.9 bits (154), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/249 (24%), Positives = 98/249 (39%), Gaps = 29/249 (11%) Query: 45 AWTPPEDIAQRFPNLEILFSVGAGIDQFDMSILPPELPVVRMTEPGIVAGMVQYVT---- 100 A+ E IA + L+++ + G G D D+ + I V Y Sbjct: 102 AYMTAERIA-KAKKLKMIVTAGIGSDHTDLEA---------ANKHNITVAEVTYCNSHSV 151 Query: 101 --HAVLGLHREARLYARQQRQQV---WQ----AHRVRPASACRVGVLGLGMLGRAVLQQL 151 H V+ + + R Y Q + W R A VG + G +G VL+ L Sbjct: 152 AEHVVMMILSQVRNYIPSYNQVINGGWNIADCVERSYDLEAMSVGTVAAGRIGLRVLRLL 211 Query: 152 QGLGFPCAGWSRSAHQL----EGITCYSGSAGLRDFLARTDVLVCLLPLTDDTRGLLCRE 207 + R H+L E + + L DV+ PL +T ++ + Sbjct: 212 KPFDVKLHYMDR--HRLPEAVEKELNLTYHSTLDSLTKVCDVVTLNCPLHPETEHMINEK 269 Query: 208 LFAQLPRGAALVNVGRGGHLVEDDLLAALQEGQLSAAVLDVCQTEPLPADHPFWSHPDIV 267 RG+ ++N RG D ++AAL+ GQL+ DV +P P DHP+ + P Sbjct: 270 TLKNFKRGSYIINTARGKLCDRDAIVAALKSGQLAGYAGDVWFPQPAPKDHPWRTMPHHG 329 Query: 268 LTPHIASMT 276 +TPHI+ + Sbjct: 330 MTPHISGTS 338 >gi|152982997|ref|YP_001354733.1| glycerate dehydrogenase [Janthinobacterium sp. Marseille] Length = 336 Score = 58.2 bits (139), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 55/235 (23%), Positives = 99/235 (42%), Gaps = 26/235 (11%) Query: 49 PEDIAQRF----PNLEILFSVGAGIDQFDMSILPPELPVVRMTEPGIVAGMVQYVTHAVL 104 P+ + F P L+I+F+ G D FD+ R GIV ++ T + Sbjct: 54 PDSVDDSFLAACPKLKIVFAALKGYDNFDVDACTK-----RGVWFGIVPDLLTVPTAELT 108 Query: 105 GLHREA---RLYARQQRQQVWQAHRVRPA------SACRVGVLGLGMLGRAVLQQLQGLG 155 + A + H RP + +G++G+G +G+A+ ++L G Sbjct: 109 VGLLLGLTRHVMAGDDHVRSGTFHGWRPKLYGAGLAGSTIGIIGMGRVGKAIAKRLSGFE 168 Query: 156 FPCAGW-SRSAHQLEGITCYSGSAGLRDFLARTDVLVCLLPLTDDTRGLLCRELFAQLPR 214 S + ++ + + L +D +V +LP+T DT L+ +++ R Sbjct: 169 MNAVYCDSVPLNPVDEQAWNARQVSFDELLTCSDFVVPMLPMTSDTFHLIDAHAISKMRR 228 Query: 215 GAALVNVGRGGHLVEDDLLAALQEGQLSAAVLDVCQTEPLPADHPFWSHPDIVLT 269 G+ L+N RG + E+ ++ AL +G L+ DV + E W+ PD LT Sbjct: 229 GSYLLNTSRGSVVDENAVVEALNQGHLAGYAADVFEMEE-------WARPDRPLT 276 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.140 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 774,815 Number of extensions: 33027 Number of successful extensions: 95 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 92 Number of HSP's successfully gapped: 4 Length of query: 308 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 225 Effective length of database: 914,170 Effective search space: 205688250 Effective search space used: 205688250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)