BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0927.p (493 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrog... 499 e-142 gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde deh... 184 1e-47 gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogen... 159 3e-40 >gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrogenase (NADP+) [Janthinobacterium sp. Marseille] Length = 490 Score = 499 bits (1284), Expect = e-142, Method: Compositional matrix adjust. Identities = 252/491 (51%), Positives = 343/491 (69%), Gaps = 6/491 (1%) Query: 3 SLELQRPDLMPGTQLIGAQWRAAADGRVLEVSNPATGQVFATVPDGNAEDARAAVDAAVA 62 +L+L+ P ++ I W +V+NPA G VP+ A++ A+ AA A Sbjct: 6 ALQLKDPTILRNHAYINGAWVTGKAS--FDVNNPADGSKITDVPNLGAQETEQAIQAAHA 63 Query: 63 AFPAWRATPAKQRATIIKRWNDLLLAHQEDLGRLISREQGKPLAEAKGEVAYAASYVEWF 122 AFPAW A K+RA I++ W DL++A+ +DL L++ EQGKPL E++GEV Y AS++EWF Sbjct: 64 AFPAWAAKTGKERAGIMRIWFDLIIANADDLAALMTAEQGKPLIESRGEVIYGASFIEWF 123 Query: 123 GEEATRANGDIIPAPVTGRRMMALKEPVGVVAAITPWNFPAAMIARKIAPALAAGCTVVC 182 EEA R +GD++ + + +R + +K+P+GV A+ITPWNFP AMI RK+APA+AAGCT+V Sbjct: 124 AEEAKRVSGDVMASTWSDKRTVTIKQPIGVCASITPWNFPIAMITRKVAPAIAAGCTIVI 183 Query: 183 KPAEDTPLTSLAIIRLALEAGVPAGVINIVTASRERTPEVVDVWLADSRVRKISFTGSTA 242 KPAE TPL++LAI LA AG+P GVIN+VT+ +++ V V + VR +SFTGST Sbjct: 184 KPAEQTPLSALAIAELAHRAGIPPGVINVVTSDSDQSIAVGKVLCSSPIVRHVSFTGSTP 243 Query: 243 VGKHLARHSADTLKKLSLELGGNAPFIVFDDADLDAAIDGVMAAKFRNGGQTCVSPNRIY 302 VG+ L A T+KK+ LELGG+APFIVFDDADLDAA+ G + +K+RN GQTCV NR Y Sbjct: 244 VGRILMEQCAPTVKKIGLELGGHAPFIVFDDADLDAAVVGALQSKYRNAGQTCVCTNRFY 303 Query: 303 VQEKVYDAFVAKLGARVAALKVGPATDPASQIGPMINARAIAKIDQHVRDAIERGARVIT 362 V E +YD FV KLGA A +KVG + GP+I+A+A+ K++QHV DA+ +GA+VIT Sbjct: 304 VHESIYDTFVQKLGAGAAKIKVGNGVEQGVLQGPLIDAQAVKKVEQHVSDAVSKGAKVIT 363 Query: 363 GGKRLQGPGFDSDNYYAPTVLANVTGQMQCSCEETFGPVAPVTRFATEEEVVTAANATPF 422 GGK+ G+ +Y PTVL+N++ M EETFGPVA V +F TE+E V AAN T F Sbjct: 364 GGKQHALGGY----FYEPTVLSNISPDMLIMHEETFGPVAAVIKFKTEDEAVAAANDTDF 419 Query: 423 GLAAYFYSTDVRRIHRVTDALESGIVGVNEGALAAEAAPFGGVKESGYGREGSVHGLDDY 482 GLA+YFYS D+ R+ RV + LE G+VG+N G ++ E APFGGVK+SG GREGS +G+++Y Sbjct: 420 GLASYFYSRDIGRVWRVAEKLEYGMVGINTGLISNEVAPFGGVKQSGLGREGSKYGIEEY 479 Query: 483 LHTKYVCQGQL 493 L KY+C G + Sbjct: 480 LEIKYLCMGGI 490 >gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde dehydrogenase [Janthinobacterium sp. Marseille] Length = 505 Score = 184 bits (466), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 148/484 (30%), Positives = 232/484 (47%), Gaps = 14/484 (2%) Query: 16 QLIGAQWRAAADGRVLEVSNPATGQVFATVPDGNAEDARAAVDAAVAAFPAWRATPAKQR 75 I + A GR +V NPATG+ A V + D +A V A AA PAW T +R Sbjct: 9 HYINGRLTETAGGRQQDVFNPATGEASAQVVLASDADVQAVVATAKAAAPAWADTAPLKR 68 Query: 76 ATIIKRWNDLLLAHQEDLGRLISREQGKPLAEAKGEVAYAASYVEWFGEEATRANGDIIP 135 A I+ ++ DL+ H +DL I+RE GK ++AKGEV VE+ Sbjct: 69 ARILFKFKDLIEKHHDDLAAAITREHGKVFSDAKGEVTRGLEVVEFACGVPQLLKTQFTD 128 Query: 136 APVTGRRMMALKEPVGVVAAITPWNFPAAMIARKIAP-ALAAGCTVVCKPAEDTPLTSLA 194 G L++P+GV A ITP+NFP M+ +AP ALA G T + KP+E P SL Sbjct: 129 NIGGGIDNWNLRQPLGVTAGITPFNFPF-MVPMWMAPVALATGNTFILKPSERDPSPSLM 187 Query: 195 IIRLALEAGVPAGVINIVTASRERTPEVVDVWLADSRVRKISFTGSTAVGKHL-----AR 249 + L +AG+P GV N++ + VD L V+ +SF GST + +++ AR Sbjct: 188 VAELLQQAGLPDGVFNVLQGDKL----AVDGLLQHPDVKAVSFVGSTPIAEYIYATGAAR 243 Query: 250 HSADTLKKLSLELGGNAPFIVFDDADLDAAIDGVMAAKFRNGGQTCVSPNRIYVQEKVYD 309 ++ G +V DA+L+ A+D ++ A + + G+ C++ + + D Sbjct: 244 KGGSYPLRVQALGGAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAISVAVAVGDIAD 303 Query: 310 AFVAKLGARVAALKVGPATDPASQIGPMINARAIAKIDQHVRDAIERGARVITGGKRLQG 369 VA L RV +LKV + +++GP+++A AKI+ ++ ++ GA+++ G+ L+ Sbjct: 304 KLVAALIPRVKSLKVKNGMEADAEMGPVVSAAHKAKIEGYIDAGVKAGAKLLVDGRGLKV 363 Query: 370 PGFDSDNYYAPTVLANVTGQMQCSCEETFGPVAPVTRFATEEEVVTAANATPFGLAAYFY 429 G D + + +VT +M EE FGPV V R + N FG + Sbjct: 364 AGHDKGFFLGGCLFDHVTPEMTIYQEEIFGPVLCVLRVPNFAAALELINRHEFGNGVSLF 423 Query: 430 STDVRRIHRVTDALESGIVGVNEGALAAEA-APFGGVKESGYGREGSV--HGLDDYLHTK 486 ++D + +E G+VG+N A FGG K S +G + G+ Y K Sbjct: 424 TSDGNTAREFSRRVEVGMVGINVPIPVPMAWHSFGGWKRSMFGDTHAYGEEGIKFYTRYK 483 Query: 487 YVCQ 490 + Q Sbjct: 484 SIMQ 487 >gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase [Janthinobacterium sp. Marseille] Length = 1242 Score = 159 bits (402), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 136/469 (28%), Positives = 224/469 (47%), Gaps = 45/469 (9%) Query: 21 QWRAA-----ADGRVLEVSNPAT-GQVFATVPDGNAEDARAAVDAAVAAFPAWRATPAKQ 74 QWRAA +EV NPA V TV +A A+ A + W+A P + Sbjct: 585 QWRAAPSCTQVSSACIEVRNPANHADVVGTVQQADAAVLELALQHATSGINTWQAKPIAE 644 Query: 75 RATIIKRWNDLLLAHQEDLGRLISREQGKPLAEAKGEVAYAASYVEWFGEEATRANGDII 134 RA I+ + DL H +L L+ RE GK L A GE+ A ++ ++ +A ++ + Sbjct: 645 RAAILLQAADLFQQHATELIALLVREAGKTLPNAIGELREAIDFLRYYSAQAIASDAN-- 702 Query: 135 PAPVTGRRMMALKEPVGVVAAITPWNFPAAMIARKIAPALAAGCTVVCKPAEDTPLTSLA 194 +P+G+VA I+PWNFP ++ +++ ALAA V+ KPAE TPL + Sbjct: 703 -------------QPLGLVACISPWNFPLSIFTGQVSAALAAANVVLAKPAEQTPLIACR 749 Query: 195 IIRLALEAGVPAGVINIVTASRERTPEVVDVWLADSRVRKISFTGSTAVGKHLAR----H 250 ++L +AGVP + + S E + + D RV + FTGST V + + R Sbjct: 750 AVQLLHQAGVPENALLFLPGSGETIGAQL---VTDPRVSAVVFTGSTQVAQSIQRKLVQR 806 Query: 251 SADTLKKLSL--ELGGNAPFIVFDDADLDAAIDGVMAAKFRNGGQTCVSPNRIYVQEKVY 308 S K + L E GG IV A + + V+++ F + GQ C + + +Q+ + Sbjct: 807 SISEGKDIPLIAETGGQNTMIVDSSALCEQVVRDVISSAFDSAGQRCSALRVLCLQDDIA 866 Query: 309 DAFVAKLGARVAALKVGPATDPASQIGPMINARAIAKIDQHVRDAIERGARVITGGKRLQ 368 + + L + L++G A+ +GP+I+A A A + ++R A G +V ++L Sbjct: 867 EQTLQMLHGAMQELRIGRPDHLATDVGPVIDAEAQAHLQAYIRQAQAAGKQV----RQLP 922 Query: 369 GPGFDSDNYYAPTV--LANVTGQMQCSCEETFGPVAPVTRFATEE--EVVTAANATPFGL 424 P + ++ AP + +A++ ++Q E FGPV V R+ ++ +++ N+T FGL Sbjct: 923 LP-VTNGSFVAPCIIEIADIN-ELQ---REVFGPVLHVLRYRRDDLPQLLMDINSTGFGL 977 Query: 425 AAYFYSTDVRRIHRVTDALESGIVGVNEGALAAEAA--PFGGVKESGYG 471 ++ I V + G + VN + A PFGG SG G Sbjct: 978 TLGIHTRIDETIDYVVRHAQVGNIYVNRNIVGAVVGVQPFGGEGLSGTG 1026 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.133 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,128,821 Number of extensions: 46709 Number of successful extensions: 161 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 3 Length of query: 493 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 406 Effective length of database: 899,382 Effective search space: 365149092 Effective search space used: 365149092 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)