BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0924.p (164 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980927|ref|YP_001351836.1| Lpr family transcriptional regu... 77 6e-16 gi|152981798|ref|YP_001355132.1| auxin efflux carrier [Janthinob... 70 6e-14 gi|152981736|ref|YP_001352356.1| AsnC family transcriptional reg... 67 5e-13 >gi|152980927|ref|YP_001351836.1| Lpr family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 155 Score = 77.0 bits (188), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 2/151 (1%) Query: 8 KLDRIDLRILCHLQQNSRITNVILADAVGLSPSPCLIRVKRLEKAGYISGYGAYIRLEKL 67 K DR D +L LQ R +NV L++ V LSP C RV+RLE+ G I GY A + + Sbjct: 3 KFDRYDRILLETLQSKGRASNVELSERVNLSPPQCYRRVQRLEQEGVIRGYSAQVDAAAI 62 Query: 68 ADVQIVFTEVTLSDHRREDFAKFESYIRNVDEIIECHLVSGGYDYLLKFMTRSVVHYQSV 127 F + ++ + + + E IR EI+EC+ +SG +DYLLK + + S Sbjct: 63 GLGVTAFVNLNIAREQFKQVRELEKAIRQFPEILECYTISGDFDYLLKVVAVDLKSLSSF 122 Query: 128 IESLLEQNLRIEKYFSYIVIKSPFVKHHYPL 158 + L Q + S + ++ +K PL Sbjct: 123 LTDRLMQVPGVAGVRSMVCLEE--IKPASPL 151 >gi|152981798|ref|YP_001355132.1| auxin efflux carrier [Janthinobacterium sp. Marseille] Length = 157 Score = 70.1 bits (170), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 67/147 (45%) Query: 2 MTNGALKLDRIDLRILCHLQQNSRITNVILADAVGLSPSPCLIRVKRLEKAGYISGYGAY 61 M N L LD +D RIL LQ ++ TN LA AV SP CL RVKRL AG I A Sbjct: 1 MVNKQLDLDELDRRILNALQMDASQTNNDLAAAVHASPPTCLRRVKRLIDAGVIERQVAI 60 Query: 62 IRLEKLADVQIVFTEVTLSDHRREDFAKFESYIRNVDEIIECHLVSGGYDYLLKFMTRSV 121 + + + E+TL E +FE+ + +++C+ VS G D++L + Sbjct: 61 VAPQMVGAGLTSIVEITLDKQADEQQVEFEALVAQESAVLQCYRVSPGPDFVLVVQVADM 120 Query: 122 VHYQSVIESLLEQNLRIEKYFSYIVIK 148 Y + L + + S+ I Sbjct: 121 PAYHVLAHRLFATHANVRNVRSFFSIN 147 >gi|152981736|ref|YP_001352356.1| AsnC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 169 Score = 67.4 bits (163), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 58/106 (54%) Query: 9 LDRIDLRILCHLQQNSRITNVILADAVGLSPSPCLIRVKRLEKAGYISGYGAYIRLEKLA 68 LD++D ++L LQ++++ LAD V +S CL R++ + AG IS A I L Sbjct: 7 LDKVDRKLLNLLQKDNQTPTRTLADKVHISQPTCLRRIRDMRDAGIISADVAMIDPFALG 66 Query: 69 DVQIVFTEVTLSDHRREDFAKFESYIRNVDEIIECHLVSGGYDYLL 114 + F EV+L + E +FE + E+++C+ VSG YDY L Sbjct: 67 YGMLAFLEVSLGNQSDEHMQEFEVRMGKEAEVMQCYFVSGDYDYFL 112 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.141 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 341,385 Number of extensions: 12098 Number of successful extensions: 42 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 3 Length of query: 164 Length of database: 1,221,021 Length adjustment: 76 Effective length of query: 88 Effective length of database: 940,049 Effective search space: 82724312 Effective search space used: 82724312 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)