BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0918.p (447 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980838|ref|YP_001354006.1| major facilitator transporter [... 132 3e-32 gi|152982698|ref|YP_001352731.1| major facilitator transporter [... 132 5e-32 gi|152980910|ref|YP_001353544.1| major facilitator transporter [... 61 1e-10 >gi|152980838|ref|YP_001354006.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 462 Score = 132 bits (333), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 111/436 (25%), Positives = 202/436 (46%), Gaps = 32/436 (7%) Query: 30 LLLLCGLCLIIDGFDVQAMGYVAPAIIADWGVSKASLGPVFGAGLLGMLLGSLVLTPVGD 89 L ++ L D D+ M Y+ +I ++G++ A G + A +GM LG++ + D Sbjct: 29 LFMVIALAFFFDNLDLAMMAYLLGSIKTEFGLTTAQAGMLGSASFVGMALGAVSSGMLAD 88 Query: 90 RYGRRPVLIVSTLFFAVCMLVTPLVSSLDQLLVVRFITGFGLGSIMPNAMALVGEFSPSS 149 ++GR+P+ +S + + V + + L + R + G G+G +P A L+ EF P+ Sbjct: 89 KFGRKPIFQISMIIWGVASYLCSTANDPVSLAIYRVLLGIGMGMELPLAQTLLSEFIPAK 148 Query: 150 SRVTRMMLVSCGFTVGAAAGGFVSAALIPHHGWHSVFWVGGAVPLVLGLAMLVWLPESIQ 209 R + L+ + + G +S ++ + W ++F + GA+P V + ++PES + Sbjct: 149 RRGKYLALMDGNWPIAFICAGLMSYYVLASYSWRTMFLL-GAIPAVFLFVIRRYVPESPR 207 Query: 210 FLVLHRRPHAQVARWLRKLDPAIVIDDKSNIVVKEAKAEGMP---VAALFRDGRA-GVTV 265 +L R HA+ + ++D V K K + +P A+ RD A G+ V Sbjct: 208 WLESKGR-HAEASN---------IVDGIEGEVKKILKVDSLPPIVQTAMMRDQEAFGIKV 257 Query: 266 L-----------LWVISFMNLINLYFLSNWLPTLIHDAGYSTSTAVLIATSLQVGGVIGT 314 L +W + F L+ Y L+ W+ L+ +G + +VL + GG+ G Sbjct: 258 LWSPVYRRRTLTVWGLWFFALLGFYGLNTWIGALLQQSGLEVTKSVLYTVYIACGGIPGF 317 Query: 315 LSLGRFIHRFGFTRVLGVCFLLACLSIALIGKVAAIPELLFVAVIVAG----FCIVGGQP 370 L + R+G L + + + G VA+ F+A++ AG F + G Sbjct: 318 LWAAWVVERWGRKPACVSTLLGGAVMVFIYGWVASSAH-TFIALVSAGAMMQFFMFGMWA 376 Query: 371 AVNALAGTFYPTTLRSTGIGWALGIGRIGSVVGPVIGGQLIALQWSNGSLFVAAAIPALI 430 + YPT R++G G A +GR+GS++GP I G ++ L G +F A +I Sbjct: 377 VLYTYTPELYPTRARASGCGMASTVGRLGSLLGPTIVGVILPLVGQIG-VFTVGASCFVI 435 Query: 431 SALTITRLHRRSQGVS 446 +A + R ++G+S Sbjct: 436 AAFIVYRFGIETRGLS 451 >gi|152982698|ref|YP_001352731.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 460 Score = 132 bits (331), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 115/460 (25%), Positives = 211/460 (45%), Gaps = 20/460 (4%) Query: 1 MSIHASGALPTVHVDQVVEQGRFGAFQFSLLLLCGLCLIIDGFDVQAMGYVAPAIIADWG 60 M +H +L +V +E+ +Q SL + D D+ M +V +I A++ Sbjct: 1 MDVHTGVSL-RANVAARLERLPMTRYQRSLFGIIATAWFFDSMDLGIMTFVLGSIKAEFA 59 Query: 61 VSKASLGPVFGAGLLGMLLGSLVLTPVGDRYGRRPVLIVSTLFFAVCMLVTPLVSSLDQL 120 ++ G + + LGM LG+ + + D++GR+PV S +F+ L + + L Sbjct: 60 LTTTQAGLLASSSFLGMFLGAAIAGMLADKFGRKPVFQWSMIFWGAGSLACGFATDVTWL 119 Query: 121 LVVRFITGFGLGSIMPNAMALVGEFSPSSSRVTRMMLVSCGFTVGAAAGGFVSAALIPHH 180 +V R + GFG+G P +++V E P+ SR + ++ + +G A G ++ +P Sbjct: 120 MVFRVVLGFGMGMEFPIGLSMVSEIVPAKSRGKYVAILEGFWPLGFIAAGILAYLTLPLI 179 Query: 181 GWHSVFWVGGAVPLVLGLAMLVWLPESIQFLVLHRRPHAQVARWLRKLDPAIVIDDKS-- 238 GW +F + ++P V + ++PES ++L R A+ K++ ++ + Sbjct: 180 GWRGIF-IALSIPAVFVFIVRRYVPESPRWLEEVGR-DAEADAVTTKIEKNVIKANGGKP 237 Query: 239 --------NIVVKEAKAEGMPVAALFRDGRAGVTVLLWVISFMNLINLYFLSNWLPTLIH 290 N + K+ + A L+ A TV+LW + F L+ Y L+ WL L+ Sbjct: 238 LPTPAPPINEMPKKQDKRAL-FAELWHGVYAKRTVMLWALWFFALLGYYGLTTWLGALLQ 296 Query: 291 DAGYSTSTAVLIATSLQVGGVIGTLSLGRFIHRFGFTRVLGVCFLLACLSIALIGKVAAI 350 AGY + +V+ + + G+ G + + ++G + V L+ A + A Sbjct: 297 QAGYEVTKSVMYTVYISLAGIPGFIFSAWLLEKWG-RKPTCVLMLVGSACAAYVYGQVAT 355 Query: 351 PELLFVAVIVAGFC----IVGGQPAVNALAGTFYPTTLRSTGIGWALGIGRIGSVVGPVI 406 + +I AG C + G + A YPT R+TG G+A IGR+GS++GP Sbjct: 356 AQAPVAQLIGAGLCMQFFLFGMWSVLYAYTPELYPTRSRATGSGFASSIGRLGSLLGPFA 415 Query: 407 GGQLIALQWSNGSLFVAAAIPALISALTITRLHRRSQGVS 446 G ++ + G +F AI I+AL + + ++G S Sbjct: 416 VGVILPMTGHTG-VFTLGAISFGIAALVVIVMGTETKGRS 454 >gi|152980910|ref|YP_001353544.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 436 Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 80/330 (24%), Positives = 137/330 (41%), Gaps = 37/330 (11%) Query: 9 LPTVHVDQV-VEQGRFGAFQFSLLLLCGLCLIIDGFDVQAMGYVAPAIIADWGVSKASLG 67 L T D+ +E + LL LC + D +G+ +++ D S+ G Sbjct: 6 LSTTASDRTKLEDSIYAKVTLRLLPFLFLCYVAAYLDRVNVGFAKLSMLNDLQFSETIYG 65 Query: 68 PVFGAGLLGMLL----GSLVLTPVGDRYGRRPVLIVSTLFFAVCMLVTPLVSSLDQLLVV 123 G +G L ++++ VG R ++I ++ A M VT + V+ Sbjct: 66 LGAGIFFIGYFLFEVPSNIIMHKVGARRWIARIMITWSILSAATMFVT----TPTMFYVI 121 Query: 124 RFITGFGLGSIMPNAMALVGEFSPSSSRVTRMMLVSCGFTVGAAAGGFVS-------AAL 176 RF+ G P + + + P+S R L G + GG +S A + Sbjct: 122 RFLLGVAEAGFFPGIVLYLTYWFPTSRRGRMNALFMIGIPIAGVVGGPLSGWIMNAFAGM 181 Query: 177 IPHHGWHSVFWVGGAVPLVLGLAMLVWLPESIQFLVLHRRPHAQVARWLRKLDPAIVIDD 236 HGW +F + L LG+ L +LP SI + + WL + + AI+ + Sbjct: 182 NGWHGWQWLFLLEALPSLALGIMTLFYLPNSI-----------RASSWLSENEKAILEAN 230 Query: 237 --KSNIVVKEAKAEGMPVAALFRDGRAGVTVLLWVISFMNLINLYFLSNWLPTLIHDAGY 294 K N V ++ + VA +F + + L+ I F ++ LY +S +LPTL+ +G Sbjct: 231 IAKDNSVGDKSHS----VAGVFTNPKVW---LMAAIYFCCMMGLYGISFYLPTLVKASGV 283 Query: 295 STSTAVLIATSL-QVGGVIGTLSLGRFIHR 323 + V + T++ GVI TL + R R Sbjct: 284 KDALDVGLLTAIPYTCGVIATLLVARSADR 313 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.143 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,022,613 Number of extensions: 41906 Number of successful extensions: 286 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 287 Number of HSP's successfully gapped: 8 Length of query: 447 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 361 Effective length of database: 903,079 Effective search space: 326011519 Effective search space used: 326011519 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)