BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0917.p (304 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982855|ref|YP_001355260.1| LysR family transcriptional reg... 204 7e-54 gi|152982346|ref|YP_001355337.1| LysR family transcriptional reg... 146 2e-36 gi|152982787|ref|YP_001352203.1| LysR family transcriptional reg... 123 1e-29 gi|152979818|ref|YP_001353268.1| LysR family transcriptional reg... 56 2e-09 gi|152980807|ref|YP_001354140.1| transcriptional regulator CysB-... 54 9e-09 >gi|152982855|ref|YP_001355260.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 204 bits (518), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 105/301 (34%), Positives = 171/301 (56%), Gaps = 9/301 (2%) Query: 9 IDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFGDELFVRTAQGMQPTPF 68 +DLNLLV F + +ER ++S A RLG+SQPA+SNALARLR F D LFVRT+QGMQPTP+ Sbjct: 6 VDLNLLVAFDAIVKERNVTSAAVRLGVSQPAMSNALARLRIIFNDPLFVRTSQGMQPTPY 65 Query: 69 AEHLAEPVAAALQQVARALNLQEGFAPQDSERRFTIAMTDVGEVYFMPRLIEACACVAPG 128 AE L EPV+ A + + AL + F P + + F+ MT++GE+ +P+L++ AP Sbjct: 66 AEQLIEPVSRACELITSALQINSVFDPATTTKTFSFYMTEIGEILLLPKLLKHIQVAAPN 125 Query: 129 VRLSTVRAGNIDLKSEMEAGRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRLGHALDKRG 188 + R K M G +DLA+G F L YQ+RL+ ++ + R GH Sbjct: 126 ACVRVRRIPEQGAKEAMANGEIDLAVGLFPYLKAGFYQQRLYTDKFACIVRQGHP-TVHD 184 Query: 189 EVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRV----PHFTAVPYIVSSTA 244 ++ ++++ H++V S + +D +EK + +R ++ +F +P I+ T Sbjct: 185 SLTPQQYVDTPHVIVMSANTGHD---AAIEKILLTEHLRRKIVMTSQNFLVLPMIIEQTD 241 Query: 245 LVVTVPRKLAESAAA-PFGLRYIKPPLRLPALQTNMFWHRRYNQDEGNVWLRNLISEHFA 303 + T+P ++A+ A+ G++ ++ P+ P + WH R++ D N W+R+L+ F Sbjct: 242 AIATIPFRMAQKIASYSTGIKILESPIPFPNVDIKQHWHERFHYDPANKWMRDLMVTLFR 301 Query: 304 E 304 E Sbjct: 302 E 302 >gi|152982346|ref|YP_001355337.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 319 Score = 146 bits (369), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 99/302 (32%), Positives = 146/302 (48%), Gaps = 13/302 (4%) Query: 9 IDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFGDELFVRTAQGMQPTPF 68 +DLNLL VF V E+ ++ A L ++QPAVSNAL RLR + GDEL +RTA G++PT Sbjct: 6 LDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLGDELVIRTAHGVKPTSR 65 Query: 69 AEHLAEPVAAALQQVARALNLQEGFAPQDSERRFTIAMTDVGEVYFMPRLIEACACVAPG 128 AE L V AL + A+ + F + F +AM D ++P L+ A APG Sbjct: 66 AEELWPVVRRALSDLEAAVT-PDTFDVSRANTTFRMAMADATAALWLPFLVRAIEKDAPG 124 Query: 129 VRLSTVRAGNIDLKSEMEAGRVDLAIGAFDNLSEALY-----------QRRLFRQEYVSM 177 + + V + + + G +DLAIG F ++ L RL+ EYV + Sbjct: 125 LNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTGEYVCV 184 Query: 178 FRLGHALDKRGEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVP 237 R H L K E++L + AA HL+VS +++ L G + V F Sbjct: 185 MRKNHPLAK-VELTLDNYCAAHHLLVSFSGRAKGLMDEALTNLGRERRILLTVNQFFTAG 243 Query: 238 YIVSSTALVVTVPRKLAESAAAPFGLRYIKPPLRLPALQTNMFWHRRYNQDEGNVWLRNL 297 +V+S+ L+ +PR L S L P LP + +M WH R ++ + WLR Sbjct: 244 RVVASSDLITVLPRHLIASTGMAEALIAKDLPFELPDVHVDMLWHERDARNPAHKWLREQ 303 Query: 298 IS 299 +S Sbjct: 304 LS 305 >gi|152982787|ref|YP_001352203.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 311 Score = 123 bits (309), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 135/296 (45%), Gaps = 7/296 (2%) Query: 6 PRDIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFGDELFVRTAQGMQP 65 P +D++L+ + + E+ +S VA +L QP++S +L +LR GD L VR A+GM P Sbjct: 5 PDHLDIHLIRILYLLLCEKNVSRVALKLNRPQPSISASLRKLRELTGDPLLVRGARGMVP 64 Query: 66 TPFAEHLAEPVAAALQQVARALNLQEGFAPQDSERRFTIAMTDVGEVYFMPRLIEACACV 125 T E L + L + + F PQD R F IA D F +I Sbjct: 65 TQHGESLMKSAKRILDEAEHLFIPKTAFVPQDEARTFHIAAPDYMNTQFFTEVIARLRRE 124 Query: 126 APGVRLSTVRAG-NIDLKSEMEAGRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRLGHAL 184 +P + G + D + G +DL I +D + E L+ +LF V + R A Sbjct: 125 SPKSHIVIHALGPDTDYVRLLSDGELDLVIANWDEMPEHLHMSKLFDDPIVCLMRSDCAY 184 Query: 185 DKR---GEVSLKEFLAAEHLMVSSQESP--YDRINQNLEKAGILPSVRFRVPHFTAVPYI 239 KR ++++++L+ H SQ P + I+ LEK + ++ HF +PY+ Sbjct: 185 AKRTAKDAMTIEDYLSLPH-AAPSQILPGYHGTIDTFLEKQNLRRNIVVESAHFRMLPYM 243 Query: 240 VSSTALVVTVPRKLAESAAAPFGLRYIKPPLRLPALQTNMFWHRRYNQDEGNVWLR 295 V T LV+T ++ L+ P++ P L+ WH R +Q + WLR Sbjct: 244 VEKTDLVLTAGQQFTSFYEKTLSLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLR 299 >gi|152979818|ref|YP_001353268.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 56.2 bits (134), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 77/278 (27%), Positives = 124/278 (44%), Gaps = 31/278 (11%) Query: 9 IDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFGDELFVRTAQGMQPTPF 68 IDL LLV + +S A ++ A SN L + G LF R+A+GM TP Sbjct: 6 IDLRLLVAIADA---GSLSKAAASFPIALSAASNRLRHFEQRSGLTLFQRSAEGMHLTPA 62 Query: 69 AEHLAEPVAAALQQVARALNLQEGFAPQDSERRFTI--AMTDVGEVYFMPRLIEACACVA 126 + + L + NL++ +RR T+ A T V F+P + Sbjct: 63 GRLVLDRARHVLLETE---NLKDTLRDLTGQRRITLRLAGTTVANSTFLPAALGPFLADY 119 Query: 127 PGVRLSTVRAGNIDLKSEMEAGRVDLAIGAFD-NLSEALYQRRLFRQE-YVSMFRLGHAL 184 P + L V + D+ +++G V+ +G D NL+ + FR + V + GHAL Sbjct: 120 PEIDLQLVEHKSADVLLAVQSGEVE--VGVLDGNLATSDVIPLPFRHDKLVLLVPSGHAL 177 Query: 185 DKRGEVSLKEFLAAEHLMVSSQESPYDRINQN-LEKAGILPS----VRFRVPHFTAVPYI 239 +R V LK+ L + + P +R Q +E+ + S VR R P F A+ + Sbjct: 178 AERPSVQLKDALGFAFVCL-----PPERAMQRFIEEMAVQNSRPLRVRVRAPSFYAIAQL 232 Query: 240 VSSTALVVTVPRKLAESAAAPFGLRYIKP-PLRLPALQ 276 V+ A + +P E+AA LR+I+ P+ + AL+ Sbjct: 233 VAEQAGIAMLP----EAAA----LRHIRELPVHMVALE 262 >gi|152980807|ref|YP_001354140.1| transcriptional regulator CysB-like protein [Janthinobacterium sp. Marseille] Length = 313 Score = 54.3 bits (129), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 15/219 (6%) Query: 16 VFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFGDELFVRTAQGMQPTPFAEHLAEP 75 V + V Q ++ A+ L SQP VS A+ L G ++F R + ++ L EP Sbjct: 9 VREAVRQNFNLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRG------LTEP 62 Query: 76 VAAALQQVARALNLQEG-------FAPQDSERRFTIAMTDVGEVYFMPRLIEACACVAPG 128 A L+ V + +G FA DS FTIA T Y +P++++A P Sbjct: 63 GRAVLKSVELIMQEIDGLKRIGNEFAAHDS-GSFTIATTHTQARYSLPKVVQAFTQKFPK 121 Query: 129 VRLSTVRAGNIDLKSEMEAGRVDLAIGAFDNLS-EALYQRRLFRQEYVSMFRLGHALDKR 187 VRLS ++ + + + DLAI S E L ++ E+ + + H L K Sbjct: 122 VRLSLLQGNPKQVADMVLMDQADLAIATESIASIEGLISLPCYQWEHQVVVPVDHPLLKS 181 Query: 188 GEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSV 226 ++L+E A + S + ++I+ + P + Sbjct: 182 KSITLEELTAYPLITYDSAFAGRNKIDHAFALRNLKPDI 220 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 624,039 Number of extensions: 22098 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 7 Length of query: 304 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 221 Effective length of database: 914,170 Effective search space: 202031570 Effective search space used: 202031570 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)