BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0912.p
         (104 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981937|ref|YP_001352345.1| cytochrome c-552 precursor [Jan...   121   8e-30
gi|152981927|ref|YP_001352137.1| cytochrome c, class I [Janthino...    69   5e-14

>gi|152981937|ref|YP_001352345.1| cytochrome c-552 precursor
           [Janthinobacterium sp. Marseille]
          Length = 102

 Score =  121 bits (304), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 59/85 (69%), Positives = 69/85 (81%), Gaps = 1/85 (1%)

Query: 20  AMANEQLAKSKNCMACHSVDAKIVGPAYKEVAKKYAGQKDAEAKLVKKVLDGGSGVWGPV 79
           AMAN  LAK+KNCMACHSV  K+VGP++K++A KYAGQK AE KLV+KVL GGSG WG V
Sbjct: 19  AMANADLAKAKNCMACHSVTNKVVGPSFKDIAAKYAGQKGAEDKLVQKVLKGGSGTWGAV 78

Query: 80  AMPANKGQVTEAEAHQLVKWILSLK 104
            MPAN  QV+EAEA  LV WI++LK
Sbjct: 79  PMPAN-AQVSEAEARTLVSWIMTLK 102


>gi|152981927|ref|YP_001352137.1| cytochrome c, class I
           [Janthinobacterium sp. Marseille]
          Length = 358

 Score = 69.3 bits (168), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 26  LAKSKNCMACHSVDAKIVGPAYKEVAKKYAGQKDAEAKLVKKVLDGGSGVWGPVAMPANK 85
           LAK   C+ACH V  KI+GP + E+A KY G   A A L  K+ +G +G WGP+ MPA +
Sbjct: 280 LAKQYACVACHGVSNKIIGPGFNEIAAKYKGDAAAPAALTAKIKNGSTGAWGPIPMPA-Q 338

Query: 86  GQVTEAEAHQLVKWIL 101
             V + +   LV WI+
Sbjct: 339 AHVKDEDIKTLVGWII 354


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.126    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 216,089
Number of extensions: 6991
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 2
Length of query: 104
Length of database: 1,221,021
Length adjustment: 70
Effective length of query: 34
Effective length of database: 962,231
Effective search space: 32715854
Effective search space used: 32715854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 122 (51.6 bits)