BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0911.p (300 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 426 e-121 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 158 4e-40 gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 131 6e-32 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 91 9e-20 gi|152980792|ref|YP_001354199.1| LysR family transcriptional reg... 86 2e-18 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 426 bits (1096), Expect = e-121, Method: Compositional matrix adjust. Identities = 214/293 (73%), Positives = 248/293 (84%), Gaps = 2/293 (0%) Query: 6 RLELRQLRYFAAVAEEKHFGRAAARLHMTQPPLSQTIAALEEQLGTPLFQRTKRSVALTP 65 +ELRQLR+F VAEE HFGRAA RLHMTQPPLSQ+I ALE LG LF+RT RSVALTP Sbjct: 2 NIELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTP 61 Query: 66 AGAALLPEVQRILQQAAALPDLARRAASGASGLLSLSFISSADYSILPPLLQRFRARYPQ 125 AG ALLPE QRILQQ AALPDL RRAASGASG LSL+F+S+ADYS+LP L+ FR YPQ Sbjct: 62 AGIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQ 121 Query: 126 VQIELREATTDIQLDDLIQGKIDAGLLLPPLPEKAAALLDVRPVLSEPLIAALPEG--AV 183 V+I+LREATTD+QLD+L QG+ID GLL+PPLP+KA LD PVLSEPLI A+P+G AV Sbjct: 122 VEIDLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAVPKGLKAV 181 Query: 184 KRRGPVSLKSLRELPLIIFPRRIAPAFHDTILSCFRDAGVTPHIDQEAIQMQTIVGLVSA 243 + + V+L+++ ELPLIIFPRRIAPAFHD IL+C+RDAG+TPHI QEAIQMQTI+GLVSA Sbjct: 182 RGKQTVALQAVAELPLIIFPRRIAPAFHDAILACYRDAGLTPHIGQEAIQMQTIIGLVSA 241 Query: 244 GMGMALVPQSVSNLKRPGVDYRRLSDTAPSIQTGLAWRRDNPSGVLRALLELL 296 GMG+ALVPQSVSNLKRPGVDY+ L+D P ++TG+AWRRDN S VL A LELL Sbjct: 242 GMGIALVPQSVSNLKRPGVDYKALADKTPLVETGMAWRRDNTSPVLNAFLELL 294 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 158 bits (399), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 102/286 (35%), Positives = 168/286 (58%), Gaps = 8/286 (2%) Query: 7 LELRQLRYFAAVAEEKHFGRAAARLHMTQPPLSQTIAALEEQLGTPLFQRTKRSVALTPA 66 ++LR LRYF VAEE H +AA R+ + QPPLSQ I ALE++LG LF+R R + LT + Sbjct: 4 IDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTES 63 Query: 67 GAALLPEVQRILQQAAALPDLARRAASGASGLLSLSFISSAD-YSILPPLLQRFRARYPQ 125 G ALL + + IL+Q + RR + G SG L++ F SA + +P +++ FR + P Sbjct: 64 GQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKSPG 123 Query: 126 VQIELREATTDIQLDDLIQGKIDAGLLLPPLPEKAAALLDVRPVLSEPLIAALP--EGAV 183 V + + E+ T+ ++DL ++D + P+ +AA L + +L E +I ALP Sbjct: 124 VIMAVEESNTNELVEDLRHNRLDVAFIRSPI--GSAAGLKMETMLVEEMIVALPITHRLA 181 Query: 184 KRRGPVSLKSLRELPLIIFPRRIAPAFHDTILSCFRDAGVTPHIDQEAIQMQTIVGLVSA 243 +RR + L +L E I+ R P +D++++ R AG +P + QEA + + + LV+A Sbjct: 182 QRRKSLPLTALAEDDFILNRRPSGPGLYDSVIAACRAAGFSPRVVQEAKKNLSTLSLVAA 241 Query: 244 GMGMALVPQSVSNLKRPGVDYRRLSDTAPSIQT--GLAWRRDNPSG 287 G+G+++VP S+ +++ V Y +L + AP ++ LA+R + SG Sbjct: 242 GLGVSIVPASMRHVQLKEVVYLKL-EQAPDLRAPLHLAYRDEPQSG 286 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 131 bits (329), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 91/291 (31%), Positives = 152/291 (52%), Gaps = 15/291 (5%) Query: 7 LELRQLRYFAAVAEEKHFGRAAARLHMTQPPLSQTIAALEEQLGTPLFQRTKRSVALTPA 66 + L +L+Y AVA EKHFG AA + QP LS I LE++LG LF+R +++TP Sbjct: 17 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 76 Query: 67 GAALLPEVQRILQQAAALPDLARRAASGASGLLSLSFISSADYSILPPLLQRFRARYPQV 126 GA ++ + +R+L+Q AA+ ++A++ G L I + +LPPL++ R PQ+ Sbjct: 77 GAQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKTIIERVPQM 136 Query: 127 QIELREATTDIQLDDLIQGKIDAGLLLPPLPEKAAALLDVRPVLSEPLIAALPE-GAVKR 185 + L+E T L+ L QG++DA ++ P P++ L V+PV EP + A+P+ Sbjct: 137 PLVLQENFTVKLLELLRQGELDAAIVALPFPDQG---LLVQPVYDEPFVVAVPKHHKWAN 193 Query: 186 RGPVSLKSLRELPLIIFPRRIAPAFHDTIL------SCFRDAGVTPHIDQEAIQMQTIVG 239 R VS L+ +++ F D +L S F +G E ++TI Sbjct: 194 RDSVSTDDLKSETMLLLGN--GHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRH 251 Query: 240 LVSAGMGMALVPQ-SVSNL--KRPGVDYRRLSDTAPSIQTGLAWRRDNPSG 287 +V++G+G+ ++PQ S+ ++ K + Y + PS + L WR+ G Sbjct: 252 MVASGIGITVLPQASIPDMQAKDGMLRYIPFTQPGPSRRVVLVWRKSFTRG 302 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 90.9 bits (224), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 88/294 (29%), Positives = 137/294 (46%), Gaps = 17/294 (5%) Query: 7 LELRQLRYFAAVAEEKHFGRAAARLHMTQPPLSQTIAALEEQLGTPLFQRTKRSVALTPA 66 +ELR LRYF A A+ + F RA+ LH+TQP LS I +E++LG LF R R V LT A Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 67 GAALLPEVQRILQQAAALPDLARRAASGASGLLSLSFISSADYSILPPLLQRFRARYPQV 126 G +R L + A D + G ++ +SS LPP+L F YP + Sbjct: 61 GELFQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGI 120 Query: 127 QIE-LREATTDIQLDDLIQGKIDAGLLLPPLPEKAAALLDVRPVLSEPLIAALPEGA--V 183 +I LR + +I+ + L+ G + G+ P + ++V P+ + PL + + V Sbjct: 121 KITVLRLRSGEIE-ERLLDGDLHFGVAYAP---SSTEQINVEPLFTVPLALVVGDHHPLV 176 Query: 184 KRRGPVSLKSLRELPLIIFPRRI-APAFHDTILSCFRDAGVTPHIDQEAIQMQTIVGLV- 241 G ++L L E L++ + D IL G+TP I E ++ I+ V Sbjct: 177 GSAG-ITLNELNEHELVMLSDEYNSRKMMDAILLA---NGITPRIVMEMNAIEPILATVR 232 Query: 242 SAGMGMALVPQSVSNLKRPGVDYRRLSDTAPSIQTGLAWRRDNP-SGVLRALLE 294 + + L V + PG+ L+ T GL RR++ S RAL++ Sbjct: 233 HSSLATILSANLVDEM--PGLHQVPLTPTVTH-TVGLFTRRNSHLSAAARALVD 283 >gi|152980792|ref|YP_001354199.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 86.3 bits (212), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/254 (28%), Positives = 127/254 (50%), Gaps = 10/254 (3%) Query: 7 LELRQLRYFAAVAEEKHFGRAAARLHMTQPPLSQTIAALEEQLGTPLFQRTKRSVALTPA 66 L LRQLR F AVAE F AA RLH+TQ LS I LE++L LF R R V LT Sbjct: 3 LTLRQLRAFVAVAELSQFTLAAERLHITQSALSMLIRELEKELELKLFDRHTRMVRLTEH 62 Query: 67 GAALLPEVQRILQQAAALPDLARRAASGASGLLSLSFISSADYSILPPLLQRFRARYPQV 126 G L +R+L + +R + + G ++++ + ++L P ++ F R+P + Sbjct: 63 GEEFLLTARRVLSELEVAVMQSRESVNYKRGRVAVACSTVLAVTLLTPFMREFAQRHPGI 122 Query: 127 QIELREATTDIQLDDLIQGKIDAGLLLPPLPEKAAALLDVRPVLSEPLIAALPEGA-VKR 185 ++ LR+ + L+ G +D + PE + L P+ S+ + +P+G + + Sbjct: 123 KLMLRDVAEESIKKRLLNGDVDFSVGTQLNPESEISEL---PIFSDHFVLLMPKGHPLTK 179 Query: 186 RGPVSLKSLRELPLIIFPRRIAP--AFHDTILSCFRDAGVTPHIDQEAIQMQTIVGLVSA 243 + + L+++ + P+I +AP + + + + +T +I EA TI+ +V Sbjct: 180 QTRIPLQAISQYPVIA----MAPSSSIRAVLEAHLKRLDITLNIAYEASFPSTIIAMVRN 235 Query: 244 GMGMALVPQSVSNL 257 GMG+ ++P + L Sbjct: 236 GMGITILPANAHQL 249 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 605,415 Number of extensions: 22445 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 37 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 37 Length of query: 300 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 217 Effective length of database: 914,170 Effective search space: 198374890 Effective search space used: 198374890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)