BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0906.p
         (209 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980522|ref|YP_001354000.1| 2-dehydro-3-deoxyphosphoglucona...   320   4e-89

>gi|152980522|ref|YP_001354000.1| 2-dehydro-3-deoxyphosphogluconate
           aldolase [Janthinobacterium sp. Marseille]
          Length = 206

 Score =  320 bits (821), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 161/193 (83%), Positives = 172/193 (89%)

Query: 5   LEIMRASPVIPVIAIDKFEHAVPLARALVAGGIRVLEVTLRTEHGLPAIRAIAEQVPEAI 64
           LEIMRASPVIPVIAID   HAVPLARALVAGGIRVLEVTLRT+HGL AIRAIAEQVPEAI
Sbjct: 4   LEIMRASPVIPVIAIDDLTHAVPLARALVAGGIRVLEVTLRTQHGLAAIRAIAEQVPEAI 63

Query: 65  VGVGTLTAPEEFTASRDAGAVFGVSPGLTPALIEAAKRSGLPLLPGVMTPSEVMAAREAG 124
           +GVGTLT  E+F A+RDAGAVFGVSPGLT  LI+ +  SGLPLLPGVMTPSEVMAAREAG
Sbjct: 64  LGVGTLTRSEDFAAARDAGAVFGVSPGLTRELIQGSLASGLPLLPGVMTPSEVMAAREAG 123

Query: 125 FRQLKLFPAVPAGGIGMLNGIAGPLADVSFCPTGGITQETAPQFLACKNVVCVGGSWLTP 184
           F QLKLFPAVPAGG+GMLN IAGPL DV FCPTGGI+QETA QFLACKNV CVGGSWLTP
Sbjct: 124 FHQLKLFPAVPAGGVGMLNAIAGPLPDVLFCPTGGISQETAAQFLACKNVACVGGSWLTP 183

Query: 185 KAAIEAGDWDKIT 197
           K A+ AGDW ++T
Sbjct: 184 KDALAAGDWGRVT 196


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 538,764
Number of extensions: 23728
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 130
Effective length of database: 928,958
Effective search space: 120764540
Effective search space used: 120764540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)