BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0905.p (623 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980587|ref|YP_001354001.1| phosphogluconate dehydratase [J... 939 0.0 gi|152979865|ref|YP_001352342.1| dihydroxy-acid dehydratase [Jan... 209 4e-55 >gi|152980587|ref|YP_001354001.1| phosphogluconate dehydratase [Janthinobacterium sp. Marseille] Length = 642 Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/614 (75%), Positives = 520/614 (84%), Gaps = 7/614 (1%) Query: 1 MPLNATLASVTQRIAERSRPYRTAYLERLEAARRKGAQRGALACTNLAHGFAAFPANDKL 60 M L+ + +VT RI ERSRPYR AYL+RLE R+KG R L+CTNLAHGFAA P NDKL Sbjct: 1 MSLHPVVTAVTARIVERSRPYRAAYLQRLENTRQKGVHRSTLSCTNLAHGFAAAPQNDKL 60 Query: 61 KLKEDKAPSLAIVSAYNDMLSAHQPFERFPQIIKEAAREAGAVAQFAGGTPAMCDGVTQG 120 LK+ APS+AIVSAYNDMLSAHQPFERFP IIK+A R+AG VAQFAGG PAMCDG+TQG Sbjct: 61 VLKQQTAPSIAIVSAYNDMLSAHQPFERFPHIIKDAVRKAGGVAQFAGGVPAMCDGITQG 120 Query: 121 QSGMEMSLFSRDTIAMATAVALSHNMFDAALYLGVCDKIVPGLLIGALHFGHLPAVFVPA 180 Q GME+SLFSRDTIAM+TA+ALSHNMFDAALYLGVCDKIVPGL+IGALHFGHLPAVFVPA Sbjct: 121 QPGMELSLFSRDTIAMSTAIALSHNMFDAALYLGVCDKIVPGLVIGALHFGHLPAVFVPA 180 Query: 181 GPMTSGMSNSDKVKIRQLYTSGKIGRAELLEAEAKSYHGAGTCTFYGTANSNQMLMEAMG 240 GPMTSGMSN +K KIRQLY GKIGR LLEAE +SYH AGTCTFYGTANSNQMLME MG Sbjct: 181 GPMTSGMSNPEKAKIRQLYAQGKIGRDALLEAEGQSYHDAGTCTFYGTANSNQMLMEVMG 240 Query: 241 LHLPGAAFITPNTPLRDALTAAAAKQAAKITDLGSQYTPVGRMIDEKAIVNAIVALHATG 300 LHLPGAAFITPNTPLRDALTA AA++A +I+ G +TP+GR++DEK IVNA+VAL ATG Sbjct: 241 LHLPGAAFITPNTPLRDALTAHAAQRAVEISAQGKSFTPIGRLVDEKTIVNAVVALLATG 300 Query: 301 GSTNHTLHLVAIAKAAGIVIDWDDFDKLSAVVPLITRIYPNGSADVNHFHAAGGTGFVLR 360 GSTNHTLHLVA+AKAAGIVIDW+DFD LSA+ PL+ RIYPNG ADVNHFHAAGGTGFV+R Sbjct: 301 GSTNHTLHLVAMAKAAGIVIDWNDFDALSAIAPLVARIYPNGDADVNHFHAAGGTGFVIR 360 Query: 361 ELIDAGLMHDDVTTILGQGLRQHCKEPMLAAEGENGRPGIVTWHDAPAQSGDEGVLGTVA 420 EL+DAGL+HDDV TILG+GLR H EP L +GE V W A + SG+ VL T A Sbjct: 361 ELLDAGLLHDDVLTILGRGLRAHAAEPFL--QGEQ-----VVWQPAASVSGNTDVLRTAA 413 Query: 421 KPFAADGGLKLLQGNLGRAVIKISAVKPEHRVVEAPAVVFHSQEAFMAAFKAGELDRDFV 480 PF+ DGG+KLL GNLGRAV+K+SAVK +HR+V APA+VF SQEAFM A++AGEL+RDF+ Sbjct: 414 DPFSGDGGMKLLSGNLGRAVVKVSAVKVQHRIVRAPAIVFDSQEAFMHAYQAGELNRDFI 473 Query: 481 AVISFQGPRANGMPELHALTPALGILQDKGRHVALVTDGRMSGASGKVPAAIHVTPEVLG 540 AV+ QGPRANGMPELHALTPALG LQD GRHVALVTDGRMSGASGKVPAAIHV+PEVL Sbjct: 474 AVLRHQGPRANGMPELHALTPALGSLQDAGRHVALVTDGRMSGASGKVPAAIHVSPEVLA 533 Query: 541 GGPLGRVRNGDIIRLDAETGTLQAKVEAAEWEARAQDSADLSGNQHGMGRELFSLFRNAV 600 GGPLGRVR+GDII L+AETG LQA V AEW AR + ADLS N+ GMGRELF++FR+ V Sbjct: 534 GGPLGRVRDGDIIELNAETGVLQALVPEAEWAARGVEPADLSQNEIGMGRELFAMFRHVV 593 Query: 601 GTAEEGGATFGLPP 614 AEEG TFGLPP Sbjct: 594 SAAEEGATTFGLPP 607 >gi|152979865|ref|YP_001352342.1| dihydroxy-acid dehydratase [Janthinobacterium sp. Marseille] Length = 557 Score = 209 bits (532), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 160/522 (30%), Positives = 251/522 (48%), Gaps = 37/522 (7%) Query: 63 KED-KAPSLAIVSAYNDMLSAHQPFERFPQIIKEAAREAGAVAQFAGGTPAMCDGVTQGQ 121 KED P + + + ++ + + ++ I + +++G Q G TP + DG++ G Sbjct: 30 KEDFDKPMVGVANGHSTITPCNSGLQKLADIAIKTIKDSGGNPQVFG-TPTISDGMSMGT 88 Query: 122 SGMEMSLFSRDTIAMATAVALSHNMFDAALYLGVCDKIVPGLLIGALHFGHLPAVFVPAG 181 GM+ SL SR+ IA A++ D L +G CDK +PG +I L ++P+++V G Sbjct: 89 EGMKYSLISREVIADCIETAVNGQWMDGVLVIGGCDKNMPGGMIAMLRT-NVPSIYVYGG 147 Query: 182 PMTSGMSNSDKVKIRQLY------TSGKIGRAELLEAEAKSYHGAGTCTFYGTANSNQML 235 + G + I + T+G++ + + E + AG+C TAN+ Sbjct: 148 TIKPGNWKGKDLTIVSAFEAVGEFTAGRMSQEDFDGIERNACPSAGSCGGMYTANTMSSS 207 Query: 236 MEAMGLHLPGAAFITPNTPLRDALTAAAAKQAAKITDLGSQYTPVGRMIDEKAIVNAIVA 295 EA+GL LP ++ T P + + +AA I + + P ++ KAI NA+ Sbjct: 208 FEALGLALPYSS--TMANPDDEKVGSAAESARVLIEAIKNDLKPR-DIVTRKAIENAVAV 264 Query: 296 LHATGGSTNHTLHLVAIAKAAGIVIDWDDFDKLSAVVPLITRIYPNGSADVNHFHAAGGT 355 + ATGGSTN LH +AIA AA + DDF+++ VP+I + P+G H AGG Sbjct: 265 IMATGGSTNAVLHFLAIAHAAEVEWTIDDFERMRKKVPVICDLKPSGKYVATDLHKAGGI 324 Query: 356 GFVLRELIDAGLMHDDVTTILGQGLRQHCKEPMLAAEGENGRPGIVTWHDAPAQSGDEGV 415 V++ L+DAGL+H D TI GQ + + H D+ V Sbjct: 325 PQVMKVLLDAGLLHGDCMTITGQTVAEALA------------------HIPSVPRADQHV 366 Query: 416 LGTVAKPFAADGGLKLLQGNLGR--AVIKISAVKPEHRVVEAPAVVFHSQEAFMAAFKAG 473 + + G L +L+GNL V KI+ +K + V+ PA VF + + M A A Sbjct: 367 IHPIKDALYEQGHLAILKGNLSPEGCVAKITGLK--NPVITGPARVFDDEYSAMDAIMAN 424 Query: 474 ELDRDFVAVISFQGPRAN-GMPELHALTPALGILQDKGRHVALVTDGRMSGASGKVPAAI 532 ++ V V+ + GP+ GMPE+ A T AL + Q G V L+TDGR SG + + Sbjct: 425 KIVAGDVLVMRYLGPKGGPGMPEMLAPTSAL-VGQGLGESVGLITDGRFSGGTWGMVVG- 482 Query: 533 HVTPEVLGGGPLGRVRNGDIIRLDAETGTLQAKVEAAEWEAR 574 HV+PE GG +G V GD + +DA +Q V E R Sbjct: 483 HVSPEAFVGGLIGLVEEGDSVTIDAHKLLIQLNVPEEEIARR 524 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,550,841 Number of extensions: 69762 Number of successful extensions: 202 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 196 Number of HSP's successfully gapped: 2 Length of query: 623 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 534 Effective length of database: 891,988 Effective search space: 476321592 Effective search space used: 476321592 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)