BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0904.p
         (553 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980462|ref|YP_001354002.1| glucose-6-phosphate isomerase [...   757   0.0  

>gi|152980462|ref|YP_001354002.1| glucose-6-phosphate isomerase
           [Janthinobacterium sp. Marseille]
          Length = 546

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/547 (66%), Positives = 427/547 (78%), Gaps = 3/547 (0%)

Query: 4   TALTDTAAYQALQAHHATAVQWHLRDLFAQQPDRFERMHVRAAGLLLDYSKNRLNADTLA 63
           T LT TAA+QALQ HH       +R LFAQ P RF+++ V  AGL LDYSKN ++  T+ 
Sbjct: 3   TTLTATAAFQALQQHHTENKGRQVRHLFAQDPARFDKLSVEGAGLFLDYSKNIVDDKTMT 62

Query: 64  LLMNLARERGVEALREAMFSGEKINFTEHRAVLHTALRAPLDACDTQVDGQAVAPEVHRV 123
           LL  LARE  VEA R+AMF+G+++N TEHRAVLHTALR P +     +  Q + PE+H V
Sbjct: 63  LLYALARETEVEAQRDAMFAGKEVNRTEHRAVLHTALRKPRNE-KLLLGQQDIVPEIHEV 121

Query: 124 LQHMRSFSEQVRSGAWRGYTGREITDIVNIGIGGSFLGPQMVCTALRDYQHARLTAHFVS 183
           L  M  FSE+VRSGAWRG+  REITDIVNIGIGGS+LGP+M C ALR + H RL  HFVS
Sbjct: 122 LDRMAVFSERVRSGAWRGFDDREITDIVNIGIGGSYLGPKMTCQALRSFAHPRLNTHFVS 181

Query: 184 NVDGHDLDEVLSRIDPETTLFIVASKTFTTQETMLNAKSARAWFLQYGKQQDLARHFVAV 243
           NVDGHDLD +LSRI+P TTLFI+ASK F T ETM+NA+SARAWFL++  + DL++HFVAV
Sbjct: 182 NVDGHDLDALLSRINPATTLFIIASKGFNTAETMMNAQSARAWFLRHATESDLSKHFVAV 241

Query: 244 STNAAEVAAFGIDTANMFPFWDWVGGRYSVWSAIGLPVALLIGYEHFAQFLAGAHDMDRH 303
           ST+   V AFGI   NMFPFWDWVGGRYSVWSAIGL + L IG E F  FLAGAH MDRH
Sbjct: 242 STHLDAVQAFGIAPENMFPFWDWVGGRYSVWSAIGLALMLSIGPECFKDFLAGAHAMDRH 301

Query: 304 FCEAPLETNMPVIQALVGIWNRNFLDSASLTIAPYHQWLRFFPAYLQQLDMESNGKRITR 363
           F + PLE N+PVI AL+GIWNRNFL S+S++IAPYHQ LR FP YLQQL+MESNGK +  
Sbjct: 302 FQDTPLEQNLPVILALIGIWNRNFLGSSSISIAPYHQDLRLFPGYLQQLEMESNGKSVQV 361

Query: 364 DGTPVSVQTCPAIWGDVGTNGQHAYFQLLHQGTDITPIDFIAVLKPSHNIAEHQATLLAN 423
           DG   S  TCP IWGDVGTNGQHAYFQLLHQGTDI  +DFIA LKP+H + +HQ  LLAN
Sbjct: 362 DGAKTSTTTCPVIWGDVGTNGQHAYFQLLHQGTDIMAVDFIAALKPTHALEQHQVLLLAN 421

Query: 424 CFAQSEAFMRGKDAAEVRADLQAQGVPEAELAALVPHKTFTGNRPSNTLLLPELSPHALG 483
           CFAQSEAFMRGK+A EVRAD+QAQG+P AE+  L+PH+ F GNRPSNT+L+  L+P ALG
Sbjct: 422 CFAQSEAFMRGKNAEEVRADMQAQGLPAAEIEKLLPHRIFPGNRPSNTILMDTLNPGALG 481

Query: 484 AMIALYEHKTFVQGAIWGINSFDQWGVELGKVLAKTILAELKSDAAPDAARHDASTSALI 543
           A+IALYEHK FVQGAIWGINSFDQWGVELGK+LAK I AEL   A P+  +HD+ST+ LI
Sbjct: 482 ALIALYEHKVFVQGAIWGINSFDQWGVELGKLLAKNIAAELGDKAKPE--QHDSSTNGLI 539

Query: 544 ALARQAL 550
           A AR AL
Sbjct: 540 ARARAAL 546


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,297,863
Number of extensions: 54386
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 465
Effective length of database: 895,685
Effective search space: 416493525
Effective search space used: 416493525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)