BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0902.p
         (286 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980245|ref|YP_001354004.1| RpiR family transcriptional reg...   443   e-126

>gi|152980245|ref|YP_001354004.1| RpiR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 286

 Score =  443 bits (1139), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/284 (76%), Positives = 245/284 (86%)

Query: 3   MLLDSIRTHINSLSKSEKKVAATILANPQLALAENLTALAKNAEVSEPTVIRFCRAIGYE 62
           MLLDSIRT  +SLSKSEKKVA  +L  P+LA+AEN+TALAK AEVSEPTV+RFCRAIG++
Sbjct: 1   MLLDSIRTQYDSLSKSEKKVALAVLEQPELAIAENITALAKKAEVSEPTVVRFCRAIGFD 60

Query: 63  GWHDFKLKLAQSLALALPGADETLAQDDLAADLVNKICSRSINTLLDLRNHLNPDAIQLA 122
           GW  FKLKLAQ LALA    DE+   +D+AADLV+K+C+RSINTLLDLRN L+ +AI+ A
Sbjct: 61  GWQAFKLKLAQGLALAPGTGDESPMLEDMAADLVDKVCNRSINTLLDLRNSLDANAIEQA 120

Query: 123 LDVLARANKIEFYGQGTSGIVANDAQHKFFRSGVPTVAYSDPHIHSIAASLLKAGDCVVA 182
           L VL RAN IEFYGQGTSGI+A DAQHKFFRSGVPTVAYSDPHIHSIAASLLK GD VVA
Sbjct: 121 LQVLGRANTIEFYGQGTSGIIAADAQHKFFRSGVPTVAYSDPHIHSIAASLLKKGDVVVA 180

Query: 183 ISQRGGNAALLRSIQLARKGGADIIVLGPSGTPLAELATVLVPIDLSFNIDPYTPISARL 242
           ISQRG + +LLRS+QLAR  GA I+VL PSGTPLAELATVL+PIDL F+ DPYTPISARL
Sbjct: 181 ISQRGSSLSLLRSVQLARSSGAAIVVLAPSGTPLAELATVLIPIDLHFHTDPYTPISARL 240

Query: 243 AHLVVIDILAVGLALRRGPEFRKKMQNAQKSLQKFDMQFDSFFR 286
           AHLVVIDILAVGLALR  PE RKKM NAQK+LQKFD+QFDSF +
Sbjct: 241 AHLVVIDILAVGLALRLSPERRKKMLNAQKALQKFDLQFDSFLQ 284


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 602,491
Number of extensions: 23882
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 204
Effective length of database: 917,867
Effective search space: 187244868
Effective search space used: 187244868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)