BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0901.p
         (311 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980586|ref|YP_001354005.1| transaldolase B [Janthinobacter...   523   e-150

>gi|152980586|ref|YP_001354005.1| transaldolase B [Janthinobacterium
           sp. Marseille]
          Length = 311

 Score =  523 bits (1348), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 248/311 (79%), Positives = 282/311 (90%)

Query: 1   MSQLEQLKQYTTIVADTGDFQAMKAFAPQDATTNPSLILKAVQKAEYQPLLESVVKAHAG 60
           M+QLEQLKQYTTIVADTGDFQ++KAFAPQDATTNPSLILKAVQK EY+P++E V + HAG
Sbjct: 1   MNQLEQLKQYTTIVADTGDFQSIKAFAPQDATTNPSLILKAVQKDEYKPIMEKVARDHAG 60

Query: 61  KSTDEIIDRLLIAFGLEILKLIPGRVSTETDARLSFDTEGTVAKGRELIRLYEEAGIARE 120
           KST+EI+D LL+AFG EILK+IPGRVSTETDARLSFDTEG++ KGR LIRLYE AGI+R+
Sbjct: 61  KSTNEIVDHLLVAFGQEILKVIPGRVSTETDARLSFDTEGSIEKGRTLIRLYEAAGISRD 120

Query: 121 RVLIKIASTWEGIRAAEILEQDGIRCNLTLLFSLPQAIACAEARVQLISPFVGRIYDWYK 180
           RVLIKIASTWEGIRAA++LE++GI CNLTLLFSLPQAIACA+ARVQLISPFVGRIYDWYK
Sbjct: 121 RVLIKIASTWEGIRAAQVLEKEGIHCNLTLLFSLPQAIACADARVQLISPFVGRIYDWYK 180

Query: 181 KSTGQEYTGSDDPGVQSVKAVYNYYRKFGYATEVMGASFRNTSQIVELAGCDLLTISPDL 240
           KSTG +YTG+DDPGVQSVK +Y YYRKFGY TEVMGASFRNTSQI+ELAGCDLLTISP+L
Sbjct: 181 KSTGTDYTGADDPGVQSVKRIYTYYRKFGYDTEVMGASFRNTSQIIELAGCDLLTISPEL 240

Query: 241 LQKLADSDAPVERKLSKEAADAADIKRISLDEKAFRLALNADAMATEKLAEGIRQFAADA 300
           LQKLA+SDAP+ RKL    A  ADI +++LDEK FR  LN DAMATEKLAEGIR F  DA
Sbjct: 241 LQKLAESDAPLARKLVPAEAKNADIVKLTLDEKTFRSLLNDDAMATEKLAEGIRAFCVDA 300

Query: 301 VKLEQIVEALR 311
           VKL++++EALR
Sbjct: 301 VKLDKLIEALR 311


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.133    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 654,889
Number of extensions: 25740
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 228
Effective length of database: 914,170
Effective search space: 208430760
Effective search space used: 208430760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)