BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0898.p (492 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transp... 255 3e-69 gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATP... 214 1e-56 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 100 4e-22 gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 93 3e-20 gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 87 2e-18 >gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 523 Score = 255 bits (652), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 168/516 (32%), Positives = 261/516 (50%), Gaps = 37/516 (7%) Query: 5 LLEAHGVSKAFNEVAALTDGRLQLKRGSVHALCGGNGAGKSTFLGILMGLLRRDSGEVRL 64 +LE GV+K F L D L ++ G VH L G NGAGKST ++ G+ R D+G ++ Sbjct: 3 ILEIAGVTKRFGSHLVLNDISLNVEAGEVHCLLGENGAGKSTLCNLIFGVHRPDAGLIKY 62 Query: 65 KGKSVDFHSPAEALDHHIAIITQELSPIAGMSVAENLFLGREPRIGGICVNTRAMQRQAQ 124 G PA AL+ IA++ Q S ++ MSV ENL LGR I + + R+ Q Sbjct: 63 DGGEFRPSGPAHALELGIAMVHQHFSLVSNMSVVENLMLGRAQAI----LKQDFIIRRMQ 118 Query: 125 ALLDRLQFQVDARALMQDLSLAQVQLVEIAKAFSHDCDVMIMDEPTSAIGEKETEVLFRA 184 L D ++D ++ DLS+ + Q +EI K + ++++DEPT+ + +E + L Sbjct: 119 ELADEYDLKIDPHCIVGDLSVGERQRIEIIKCLLSNPRLLLLDEPTAVLPPEEVDSLLAV 178 Query: 185 IRSVAAQGTGIIYVSHRLSEIFQIADSYTVFRDGRYVQSGLMRDIDRSELVKAIVGRTLQ 244 R VA G G+I V+H+L+EI ++AD +V R GR V+S M D LV+++VGR ++ Sbjct: 179 CRKVAESGRGVILVTHKLAEIAKVADRTSVLRQGRIVESVCMEGADMHALVRSMVGRDVK 238 Query: 245 GRER---------------------------NRRQGGAPVLATDTLSRHGE-----FEDI 272 + + R G P L LS + D+ Sbjct: 239 SGDSVLAATLGILSDAAQDAANATPAAAAVVDSRSLGLPALQLQGLSFQDKDGVTRLSDV 298 Query: 273 SLRVHAGEVVGIYGLMGSGRSEYLNCIYGLTRAHRGSVALAERPLPAGKPAASIAAGLSL 332 L V GE+VGI G+ G+G+SE I GL G++ + E+ L AG + Sbjct: 299 HLSVARGEIVGIAGVEGNGQSELGAIIAGLLTPTGGAMKIGEQDLTGSSAQDITDAGAGI 358 Query: 333 VTEDRKESGLVLCASIQDNIALAAYRRLSRLPLIRRSRVETLVGQMIQRLQIKVSSPHLP 392 + EDR + S+ +N+ L + + SR L+ R ++ M+ ++ +SP+ P Sbjct: 359 IPEDRHAVACISELSVAENLFLGSLEKFSRFGLLDREKMAKQAATMMTEFDVRATSPNAP 418 Query: 393 VSSMSGGNQQKVVLARCLSTQPRC-LLCDEPTRGIDEGAKREVYQLIDRFVHEGGAALVV 451 +SS+SGGNQQK VLAR LS P LL +PTRG+D GA V+ I G L++ Sbjct: 419 MSSLSGGNQQKAVLARELSLDPLIFLLAAQPTRGLDVGAVEAVFNRIRTAASNGLGVLLI 478 Query: 452 SSEAQEILDLCDRIAIFKSGRMVQVVDAHRTTQEEL 487 SS+ E++ + DR+A+ G +V + A +E++ Sbjct: 479 SSDLNELIAVSDRVAVLYRGAIVGELPADPANREKI 514 >gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 511 Score = 214 bits (544), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 148/478 (30%), Positives = 241/478 (50%), Gaps = 17/478 (3%) Query: 6 LEAHGVSKAFNEVAALTDGRLQLKRGSVHALCGGNGAGKSTFLGILMGLLRRDSGEVRLK 65 LE H ++K + V A L +K G +HA+ G NGAGKST + I+ G ++ D+G+V Sbjct: 5 LELHSITKRYPSVVANDGINLSVKPGEIHAVLGENGAGKSTLMKIIYGSVKPDAGKVLWN 64 Query: 66 GKSVDFHSPAEALDHHIAIITQELSPIAGMSVAENLFLGREPRIGGICVNTR--AMQRQA 123 GK V +PA A + IA++ Q S ++V EN+ L G+ +T+ + R+ Sbjct: 65 GKEVHIANPAMARELGIAMVFQHFSLFDTLTVVENIAL-------GLPHDTKLDELARRI 117 Query: 124 QALLDRLQFQVDARALMQDLSLAQVQLVEIAKAFSHDCDVMIMDEPTSAIGEKETEVLFR 183 ++ +++ + + LS+ + Q VEI +A ++I+DEPTS + + E LF Sbjct: 118 SDTAEQYGLELEPQRHVHTLSVGECQRVEIVRALLAKPQLLILDEPTSVLTPQAVEKLFE 177 Query: 184 AIRSVAAQGTGIIYVSHRLSEIFQIADSYTVFRDGRYVQSGLMRDIDRSELVKAIVGRTL 243 +R +AA+G I+Y+SH+L EI + D+ TV R G+ R+ + L + ++G Sbjct: 178 TLRKLAAEGCSILYISHKLDEIRALCDTCTVVRAGKNTGICDPREESAASLSRMMIGCEP 237 Query: 244 QGRERNRRQGGAPVLATDTLS---RH---GEFEDISLRVHAGEVVGIYGLMGSGRSEYLN 297 + R G +LA LS H E DI+ + AGE++GI G+ G+G+ E L Sbjct: 238 PPIKHVLRSPGQTLLAVKNLSLKKNHPFATELSDINFELRAGEILGIAGVSGNGQQELLA 297 Query: 298 CIYGL-TRAHRGSVALAERPLPAGKPAASIAAGLSLVTEDRKESGLVLCASIQDNIALAA 356 + G RA + L + PA GL V E+R G V S+ DNI L+ Sbjct: 298 ALSGEDPRAEAQMILLQGERVGHFNPAQRRERGLGFVPEERLGRGAVPDMSLADNILLSH 357 Query: 357 YRRLS-RLPLIRRSRVETLVGQMIQRLQIKVSSPHLPVSSMSGGNQQKVVLARCLSTQPR 415 + IR+ + + +I+R +K PH S+SGGN QK ++ R + P+ Sbjct: 358 QTGATISSGFIRKHAIVKMATDVIERFVVKAGGPHAAARSLSGGNLQKYIVGREVMRNPK 417 Query: 416 CLLCDEPTRGIDEGAKREVYQLIDRFVHEGGAALVVSSEAQEILDLCDRIAIFKSGRM 473 L+ +PT G+D GA ++ + G A LV+S E E+ ++ DR+ + GR+ Sbjct: 418 VLIVAQPTWGVDVGAAAQIRAELVALRDAGCALLVISEELDELFEISDRLMVIAKGRL 475 Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 98/209 (46%), Gaps = 10/209 (4%) Query: 270 EDISLRVHAGEVVGIYGLMGSGRSEYLNCIYGLTRAHRGSVALAERPLPAGKPAASIAAG 329 + I+L V GE+ + G G+G+S + IYG + G V + + PA + G Sbjct: 21 DGINLSVKPGEIHAVLGENGAGKSTLMKIIYGSVKPDAGKVLWNGKEVHIANPAMARELG 80 Query: 330 LSLVTEDRKESGLVLCASIQDNIALAAYRRLSRLPLIRRSRVETLVGQMIQRLQIKVSSP 389 +++V + L ++ +NIAL L RR + ++ +++ P Sbjct: 81 IAMVFQ---HFSLFDTLTVVENIALGLPHDTKLDELARR------ISDTAEQYGLELE-P 130 Query: 390 HLPVSSMSGGNQQKVVLARCLSTQPRCLLCDEPTRGIDEGAKREVYQLIDRFVHEGGAAL 449 V ++S G Q+V + R L +P+ L+ DEPT + A ++++ + + EG + L Sbjct: 131 QRHVHTLSVGECQRVEIVRALLAKPQLLILDEPTSVLTPQAVEKLFETLRKLAAEGCSIL 190 Query: 450 VVSSEAQEILDLCDRIAIFKSGRMVQVVD 478 +S + EI LCD + ++G+ + D Sbjct: 191 YISHKLDEIRALCDTCTVVRAGKNTGICD 219 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 118/244 (48%), Gaps = 11/244 (4%) Query: 3 ELLLEAHGVSKAFNEVAALTDGRLQLKRGSVHALCGGNGAGKSTFLGILMGLLRRDSGEV 62 +++L GVSK F + AL+D +++ +G ++ L G NGAGK+TF ++ GL + D+G Sbjct: 4 QIILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSF 63 Query: 63 RLKGKSVDFHSPAEALDHHIAIITQELSPIAGMSVAENLFLGREPR----IGGICVNTRA 118 L GK +P + IA Q + M+ EN+ +GR R + G + +A Sbjct: 64 ELAGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKA 123 Query: 119 MQRQ-------AQALLDRLQFQVDARALMQDLSLAQVQLVEIAKAFSHDCDVMIMDEPTS 171 +R+ A LL+ + A + LS + +EIA+A + D ++ +DEP + Sbjct: 124 ARREEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAA 183 Query: 172 AIGEKETEVLFRAIRSVAAQGTGIIYVSHRLSEIFQIADSYTVFRDGRYVQSGLMRDIDR 231 + E L + + A+G I+ + H + + + D TV G+ + G+ D+ + Sbjct: 184 GMNATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPADVQK 243 Query: 232 SELV 235 V Sbjct: 244 DPAV 247 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 9/206 (4%) Query: 269 FEDISLRVHAGEVVGIYGLMGSGRSEYLNCIYGLTRAHRGSVALAERPLPAGKPAASIAA 328 ISL VH GE+V + G G+G+S L I GL GS+ + + PA I Sbjct: 32 INKISLEVHEGEIVTLIGANGAGKSTTLRAINGLEPLAHGSIRMNGHLVSGASPAEVIDH 91 Query: 329 GLSLVTEDRKESGLVLCASIQDNIALAAYRRLSRLPLIRRSRVETLVGQMIQRLQIKVSS 388 G+S E R+ + ++++N+ + AYRR + + R +E + + RL+ +V Sbjct: 92 GISHCPEGRR---VFPQLTVRENMEMGAYRRKDKAKV--RDDMERMFDK-FPRLRERVQQ 145 Query: 389 PHLPVSSMSGGNQQKVVLARCLSTQPRCLLCDEPTRGIDEGAKREVYQLIDRFVHEGGAA 448 ++SGG QQ + +AR L ++PR ++ DEP+ G+ +++ LI EG Sbjct: 146 V---AGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQIFSLIREIRSEGTTV 202 Query: 449 LVVSSEAQEILDLCDRIAIFKSGRMV 474 L+V A L +CDR + ++G +V Sbjct: 203 LIVEQNAYAALAMCDRGYLLENGHIV 228 Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 99/217 (45%), Gaps = 12/217 (5%) Query: 9 HGVSKAFNEVAALTDGRLQLKRGSVHALCGGNGAGKSTFLGILMGLLRRDSGEVRLKGKS 68 +G + N+++ L++ G + L G NGAGKST L + GL G +R+ G Sbjct: 26 YGATTGINKIS------LEVHEGEIVTLIGANGAGKSTTLRAINGLEPLAHGSIRMNGHL 79 Query: 69 VDFHSPAEALDHHIAIITQELSPIAGMSVAENLFLGREPRIGGICVNTRAMQRQAQALLD 128 V SPAE +DH I+ + ++V EN+ +G R + ++ + + D Sbjct: 80 VSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAYRR-----KDKAKVRDDMERMFD 134 Query: 129 RL-QFQVDARALMQDLSLAQVQLVEIAKAFSHDCDVMIMDEPTSAIGEKETEVLFRAIRS 187 + + + + + LS + Q++ IA+A +++ DEP+ + E +F IR Sbjct: 135 KFPRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQIFSLIRE 194 Query: 188 VAAQGTGIIYVSHRLSEIFQIADSYTVFRDGRYVQSG 224 + ++GT ++ V + D + +G V G Sbjct: 195 IRSEGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQG 231 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/257 (24%), Positives = 115/257 (44%), Gaps = 16/257 (6%) Query: 6 LEAHGVSKAFNEVAALTDGRLQLKRGSVHALCGGNGAGKSTFLGILMGLLRRDSGEVRLK 65 LE GV+ + A+ + + G + +L G NGAGK+T ++ G ++ SG V+L Sbjct: 10 LELQGVTMRIAGLTAVDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMKPTSGRVKLF 69 Query: 66 GKSVDFHSPAEALDHHIAIITQELSPIAGMSVAENLFLGREPRIGGICVNTRAMQR---- 121 G + +P + + Q S + +VAEN+ + G C +A+ R Sbjct: 70 GHDITGMAPEQISQLGLVRSFQRTSIFSACTVAENILTALH--LKGQCGVLQALLRTQKF 127 Query: 122 ---------QAQALLDRLQFQVDARALMQDLSLAQVQLVEIAKAFSHDCDVMIMDEPTSA 172 QA LL L A L +LS + +L+ + A + V+++DEP + Sbjct: 128 RREEADLRTQANDLLAFLGLSARANTLASNLSYGEQRLLGVGLALAAKPKVLLLDEPAAG 187 Query: 173 IGEKETEVLFRAIRSVAAQGTGIIYVSHRLSEIFQIADSYTVFRDGRYVQSGLMRDI-DR 231 + ETE +R + G ++ V H + + I+D V GR + +G +I + Sbjct: 188 LNPSETEAFKEMVRRIGQSGVTVLLVEHDMHMVMSISDHIVVLNYGRLIATGSPSEIQND 247 Query: 232 SELVKAIVGRTLQGRER 248 E+++A +G ++ E Sbjct: 248 PEVIRAYLGSGIEHAEN 264 Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 14/215 (6%) Query: 270 EDISLRVHAGEVVGIYGLMGSGRSEYLNCIYGLTRAHRGSVALAERPLPAGKPAASIAAG 329 ++ S V AG++V + G G+G++ N I G + G V L + P + Sbjct: 26 DNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMKPTSGRVKLFGHDITGMAPEQ--ISQ 83 Query: 330 LSLVTEDRKESGLVLCASIQDNIALAAYRR--------LSRLPLIRRSRVE--TLVGQMI 379 L LV ++ S C ++ +NI A + + L R RR + T ++ Sbjct: 84 LGLVRSFQRTSIFSAC-TVAENILTALHLKGQCGVLQALLRTQKFRREEADLRTQANDLL 142 Query: 380 QRLQIKVSSPHLPVSSMSGGNQQKVVLARCLSTQPRCLLCDEPTRGIDEGAKREVYQLID 439 L + + L S++S G Q+ + + L+ +P+ LL DEP G++ +++ Sbjct: 143 AFLGLSARANTL-ASNLSYGEQRLLGVGLALAAKPKVLLLDEPAAGLNPSETEAFKEMVR 201 Query: 440 RFVHEGGAALVVSSEAQEILDLCDRIAIFKSGRMV 474 R G L+V + ++ + D I + GR++ Sbjct: 202 RIGQSGVTVLLVEHDMHMVMSISDHIVVLNYGRLI 236 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,025,968 Number of extensions: 41696 Number of successful extensions: 401 Number of sequences better than 1.0e-08: 54 Number of HSP's gapped: 324 Number of HSP's successfully gapped: 90 Length of query: 492 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 405 Effective length of database: 899,382 Effective search space: 364249710 Effective search space used: 364249710 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)