BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0895.p (260 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 151 4e-38 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 142 2e-35 gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reduc... 134 7e-33 gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase... 133 1e-32 gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Jant... 121 4e-29 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 151 bits (381), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 93/243 (38%), Positives = 140/243 (57%), Gaps = 5/243 (2%) Query: 15 DFAGRVAIVTGAAAGIGLATSQLLARCGAQLVLVDRSQA-VLELAERLERDSQHHLGCVL 73 D +G+VA+VTGA+ GIG A +Q LA+ GA+++ S++ ++E L + G VL Sbjct: 5 DLSGQVALVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYLGNGGK---GVVL 61 Query: 74 DVCDEAAIGRCIAQIEARYGRIDILVNNAGVALLQEAEVASSSDWDRTMAINLKAPFLLA 133 DV D A I +I+ +G + ILVNNAG+ Q A +WD +A NL A L+ Sbjct: 62 DVNDAARSVALIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLS 121 Query: 134 QAVLPMMRRQQCGRIINLASQASVVALERHAAYCASKAGLVALSRVLALEWACHGITVNA 193 +AVL M + + GRIIN+ S Y A+KAG+ +SR LA E ITVN Sbjct: 122 RAVLRGMMKAKTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNC 181 Query: 194 ISPTVVETELGKQAWAGPVGVAMRARIPVGRFAQPEEVAHLVAYLASPQAAMITGENILI 253 I+P ++T++ K + A+ ++P+GR PE++A V++LASPQA+ ITG + + Sbjct: 182 IAPGFIDTDMTKTLSEQQI-AALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTLHV 240 Query: 254 DGG 256 +GG Sbjct: 241 NGG 243 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 142 bits (359), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 129/243 (53%), Gaps = 8/243 (3%) Query: 19 RVAIVTGAAAGIGLATSQLLARCGAQLVLV-----DRSQAVLELAERLERDSQHHLGCVL 73 R+A+VTG G+G A LA G Q+V ++ L+L + D H C Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPGNKKADEWLKLMKESGYDF-HAYPC-- 59 Query: 74 DVCDEAAIGRCIAQIEARYGRIDILVNNAGVALLQEAEVASSSDWDRTMAINLKAPFLLA 133 DV D + +C+AQIE G +D+LVNNAG+ + DWD MA NL + F + Sbjct: 60 DVSDYDSAQQCVAQIEKEMGPVDVLVNNAGITRDITFKKMGKPDWDAVMATNLDSVFNMT 119 Query: 134 QAVLPMMRRQQCGRIINLASQASVVALERHAAYCASKAGLVALSRVLALEWACHGITVNA 193 + V M + GRIIN++S Y A+KAG+ ++ LALE A +TVN Sbjct: 120 KPVCDGMVERGWGRIINISSVNGQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNT 179 Query: 194 ISPTVVETELGKQAWAGPVGVAMRARIPVGRFAQPEEVAHLVAYLASPQAAMITGENILI 253 ISP + T++ + + +IP+GR +PEE+A LVAYLAS +AA +TG NI I Sbjct: 180 ISPGYIGTKMVMAIPQDVLDTKIVPQIPMGRLGKPEEIAGLVAYLASDEAAFLTGANIAI 239 Query: 254 DGG 256 +GG Sbjct: 240 NGG 242 >gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 249 Score = 134 bits (336), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 89/254 (35%), Positives = 134/254 (52%), Gaps = 13/254 (5%) Query: 10 ITQPDDFAGRVAIVTGAAAGIGLATSQLLARCGAQLVLV-----DRSQAVLELAERLERD 64 ++ + G+VA V G + GIG A + LAR GA + D+++AV A+ +E Sbjct: 1 MSNTNQLTGKVAFVQGGSRGIGAAIVKRLARDGAAVAFTYVSSADKAKAV---AQEIEAA 57 Query: 65 SQHHLGCVLDVCDEAAIGRCIAQIEARYGRIDILVNNAGVALLQEAEVASSSDWDRTMAI 124 L D D +A+ + I +GRIDILVNNAGV L E D+DRT+A+ Sbjct: 58 GGRALAIHADSSDASAVQQAIQAAAKAFGRIDILVNNAGVLALAPVEDFKLEDFDRTVAV 117 Query: 125 NLKAPFLLAQAVLPMMRRQQCGRIINLAS-QASVVALERHAAYCASKAGLVALSRVLALE 183 N+++ F+ Q M + GRII + S A + A Y SKA +V L++ LA + Sbjct: 118 NVRSVFVATQEAARHM--GEGGRIITIGSTNADRMPFAGGAVYAMSKAAIVGLTKGLARD 175 Query: 184 WACHGITVNAISPTVVETELGKQAWAGPVGVAMRARIPVGRFAQPEEVAHLVAYLASPQA 243 GITVN + P V+T++ ++ + +GR+ + EE+A VAYLA P+A Sbjct: 176 LGPRGITVNNVQPGPVDTDM--NPANSDFADTLKGLMAIGRYGKDEEIASFVAYLAGPEA 233 Query: 244 AMITGENILIDGGY 257 ITG ++ IDGG+ Sbjct: 234 GYITGASLTIDGGF 247 >gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase [Janthinobacterium sp. Marseille] Length = 264 Score = 133 bits (334), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 94/257 (36%), Positives = 138/257 (53%), Gaps = 18/257 (7%) Query: 18 GRVAIVTGAAAGIGLATSQLLARCGAQLVL--VDRSQAVLELAERLERDSQHHLGCV--- 72 G+ A+VTG+ +GIGL +Q LA+ GA +VL + + L L R+ + + CV Sbjct: 8 GKTALVTGSTSGIGLGIAQALAQQGADIVLNGFGDANEIKTLQAALMRN--YGVKCVHHP 65 Query: 73 LDVCDEAAIGRCIAQIEARYGRIDILVNNAGVALLQEAEVASSSDWDRTMAINLKAPFLL 132 D+ A I +A ++GR+DILVNNAG+ + E WD +AINL + F Sbjct: 66 ADMSKPAEIEAMMAFAAQQFGRVDILVNNAGIQHTETIEDFPVEKWDAIIAINLSSAFHT 125 Query: 133 AQAVLPMMRRQQCGRIINLASQASVVALERHAAYCASKAGLVALSRVLALEWACHGITVN 192 + LPMM+ + GRIIN+AS +V + +AY A+K G+V L++V ALE A GIT N Sbjct: 126 TRLALPMMQAKNWGRIINIASVHGLVGSVQKSAYVAAKHGIVGLTKVTALEMAHTGITCN 185 Query: 193 AISPTVVETELGKQ---AWAGPVGVAMRA--------RIPVGRFAQPEEVAHLVAYLASP 241 AI P V T L ++ A A G++ A + P G F P+++ L +L S Sbjct: 186 AICPGWVLTPLVQKQVDARAAREGLSDEAAKKDLVSEKQPSGEFVTPQQLGALAVFLCSE 245 Query: 242 QAAMITGENILIDGGYT 258 A + G +DGG+T Sbjct: 246 AAVQVRGAAWNMDGGWT 262 >gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 272 Score = 121 bits (304), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 129/251 (51%), Gaps = 7/251 (2%) Query: 15 DFAGRVAIVTGAAAGIGLATSQLLARCGAQLVLVDRS-QAVLELAERLERDSQHHLGCVL 73 +F G+VA+VTGA++G+G +++LA GAQ++L R + EL +E + L Sbjct: 20 NFEGKVALVTGASSGLGARFAKVLAMAGAQVILASRRVDRLKELRAEIEAEGGAAQVVSL 79 Query: 74 DVCDEAAIGRCIAQIEARYGRIDILVNNAGVALLQEAEVASSSDWDRTMAINLKAPFLLA 133 DV D A+I IA E G IDILVNN+GV+ Q + D+ M N + F +A Sbjct: 80 DVTDYASIKSAIAHAETETGAIDILVNNSGVSASQRLVDVTPEDYAHMMDTNQRGAFFVA 139 Query: 134 QAVLPMMRRQQCG------RIINLASQASVVALERHAAYCASKAGLVALSRVLALEWACH 187 Q V M + G RIIN+ S A + + YC SKA +V +++ +A+EW Sbjct: 140 QEVAKRMIARHKGDPKKQHRIINIGSVAGLRVVPELGLYCMSKAAVVHMTKAMAVEWGKF 199 Query: 188 GITVNAISPTVVETELGKQAWAGPVGVAMRARIPVGRFAQPEEVAHLVAYLASPQAAMIT 247 GI NAI P + TE+ + G + +P R +PE++ L+ LA+ ++ I Sbjct: 200 GINTNAICPGYIGTEMNLDYFQSEQGQQVLGMLPRKRLGKPEDLDGLLLLLAAEESHFIN 259 Query: 248 GENILIDGGYT 258 G + D G + Sbjct: 260 GAIMTADDGLS 270 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.133 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 524,615 Number of extensions: 18549 Number of successful extensions: 119 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 23 Length of query: 260 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 179 Effective length of database: 921,564 Effective search space: 164959956 Effective search space used: 164959956 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)