BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0892.p
         (364 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982960|ref|YP_001353971.1| oxidoreductase [Janthinobacteri...    55   6e-09

>gi|152982960|ref|YP_001353971.1| oxidoreductase [Janthinobacterium
           sp. Marseille]
          Length = 716

 Score = 55.5 bits (132), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 5/130 (3%)

Query: 156 IPEHISFEDAAVTEPLSCAIHAVNRGDIQLDDVVVIAGAGTLGLLMVQVAHLKTPK-KLI 214
           I + ++ + A+     + A+  V R    L +  V+ G G LG L VQ+  LK    ++I
Sbjct: 139 IDDAVNIDHASTVTLGAIALQGVRRASPTLGETFVVIGLGILGQLTVQL--LKANGCRVI 196

Query: 215 VIDLSDQRLQLAREYGADIVINPSREDAQKIVRAATGQYGCDVYIETTGAP--AGVTQGL 272
            +DL ++R++LA+++G D+ I+   E+  + V   TG  G D  I T   P  A ++   
Sbjct: 197 GVDLDNERVRLAQQHGMDVGISTETENDIEHVNRMTGGIGADGVIITAATPSDAVISTAF 256

Query: 273 DMIRKLGRFV 282
            M RK GR V
Sbjct: 257 KMCRKKGRTV 266


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 892,785
Number of extensions: 37757
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 2
Length of query: 364
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 280
Effective length of database: 910,473
Effective search space: 254932440
Effective search space used: 254932440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)