BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0891.p (516 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 162 4e-41 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 155 5e-39 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 154 1e-38 gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 153 2e-38 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 148 8e-37 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 162 bits (411), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 111/329 (33%), Positives = 187/329 (56%), Gaps = 20/329 (6%) Query: 195 TVLMLAAGVMLVM-MGVGWWLTRTLLRQMGGEPGDVVMVMRHISQGDLQQQITLKPGCR- 252 T++ + AG+ L++ + VGWW+TR++ R + G V R ++QGDL + +K Sbjct: 191 TIINILAGISLLLSIAVGWWVTRSITRPLNTAVG----VARRVAQGDLSGPVFVKTTNEV 246 Query: 253 DSMMHAIQRMVERVCQVVTEVRSNAESLVSTAEEVSVTAQALSRASTEQATGVEQTSEAL 312 +M A++ M + + +VT+VR+ ++ + + E++ LS + +QA+ +E+T+ A+ Sbjct: 247 GQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRTEQQASSLEETASAM 306 Query: 313 ERIHGSILSTSQNARLTDQIAAAAAVEARACAATVKQMVAAI-------QQIAGKIVVID 365 E + ++ + NA+ +Q+AA+A AR + V +++A + ++IA VID Sbjct: 307 EELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAINTSSKKIADITGVID 366 Query: 366 DIAYQTNLLALNATIEAAHAGEHGTGFAVVAAEVRRLAERSQAAAQEI-----DEVAR-- 418 IA+QTN+LALNA +EAA AGE G GFAVVA+EVR LA+RS AA EI D VA+ Sbjct: 367 SIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAMEIKALIDDSVAKVD 426 Query: 419 HNVALASTAEEQLNSMVPTITRTSSLVQEIVESSARQSAAVSQISQAATQLAQVIQQNSL 478 + L A ++ +V ++ S +V I +S QSA + Q+ QA Q+ + QQN+ Sbjct: 427 NGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQVGQAIVQIDEGTQQNAA 486 Query: 479 SSEELAVTSEELNRRAVLLQTTVGFFQCE 507 E+ A ++ L +A L V F+ + Sbjct: 487 LVEQSAAAAQSLREQADQLMQLVSIFKLD 515 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 155 bits (393), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 127/396 (32%), Positives = 209/396 (52%), Gaps = 23/396 (5%) Query: 129 FEEVVQRLLGLAGQEQSADERILVILELRAAIDSVQASFARHRSYDIALGDASALTAREI 188 F V + + L Q A+ +IL+ E+R A R + L + A E+ Sbjct: 123 FTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGEDAHEV 182 Query: 189 IANALDTVLMLAAGVMLVMMGVGWWLTRTLLRQMGGEPGDVVMVMRHISQGDLQQQITLK 248 ANA V +L+ +++ +G+ TR++ R + G + R ++ GDL I + Sbjct: 183 SANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVG----LARKVADGDLTGTIVVT 238 Query: 249 PGCRDS---MMHAIQRMVERVCQVVTEVRSNAESLVSTAEEVSVTAQALSRASTEQATGV 305 +D ++ A+Q M + ++VT+VR +++ + + +++ LS + EQA+ + Sbjct: 239 --SKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSL 296 Query: 306 EQTSEALERIHGSILSTSQNARLTDQIAAAA---AVEARACAATVKQMVAAIQQIAGKIV 362 E+T+ ++E + ++ + NAR ++Q+A A AV A + V + + +I A KIV Sbjct: 297 EETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIV 356 Query: 363 ----VIDDIAYQTNLLALNATIEAAHAGEHGTGFAVVAAEVRRLAERSQAAAQEI----- 413 VID IA+QTN+LALNA +EAA AGE G GFAVVA+EVR LA+RS +AA+EI Sbjct: 357 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLID 416 Query: 414 DEVARHNVA--LASTAEEQLNSMVPTITRTSSLVQEIVESSARQSAAVSQISQAATQLAQ 471 D V + N L A + +V ++ R + ++ EI +S Q+ + QI+QA Q+ Q Sbjct: 417 DSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQ 476 Query: 472 VIQQNSLSSEELAVTSEELNRRAVLLQTTVGFFQCE 507 V QQN+ EE A +E L +A L V F+ + Sbjct: 477 VTQQNAALVEEAAAAAESLQDQANNLSQVVSVFKLD 512 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 154 bits (389), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 114/332 (34%), Positives = 190/332 (57%), Gaps = 26/332 (7%) Query: 195 TVLMLAAGVMLVMMG-VGWWLTRTLLRQMGGEPGDV-VMVMRHISQGDLQQQITLKPGCR 252 T+L+ + L++ + W L+R++ R P D V V R ++ GDL+ +I + Sbjct: 192 TILITLGSIALILSAFLAWLLSRSITR-----PLDYAVSVARTVASGDLRNKI--QSSSN 244 Query: 253 DS---MMHAIQRMVERVCQVVTEVRSNAESLVSTAEEVSVTAQALSRASTEQATGVEQTS 309 D ++ A++ M + + Q V++VR+ E++ + + +++ LS + EQA+ +E+T+ Sbjct: 245 DETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSSRTEEQASSLEETA 304 Query: 310 EALERIHGSILSTSQNARLTDQIAAAAAVEARACAATVKQMVAAIQQI---AGKIV---- 362 ++E + ++ + NAR +Q+A +A+ A V ++V ++QI A KIV Sbjct: 305 SSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQINASAKKIVDIIG 364 Query: 363 VIDDIAYQTNLLALNATIEAAHAGEHGTGFAVVAAEVRRLAERSQAAAQEIDEVARHNV- 421 VID IA+QTN+LALNA +EAA AGE G GFAVVA+EVR LA+RS AAA+EI + +V Sbjct: 365 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGDSVD 424 Query: 422 ------ALASTAEEQLNSMVPTITRTSSLVQEIVESSARQSAAVSQISQAATQLAQVIQQ 475 L A ++ +V ++ + ++ EI+ +S QSA + Q++QA Q+ QV QQ Sbjct: 425 KVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQVNQAIGQMDQVTQQ 484 Query: 476 NSLSSEELAVTSEELNRRAVLLQTTVGFFQCE 507 N+ EE A +E LN +A L V F+ + Sbjct: 485 NAALVEEAAAAAESLNEQAAKLAEAVSVFKLD 516 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 153 bits (387), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/321 (33%), Positives = 184/321 (57%), Gaps = 23/321 (7%) Query: 204 MLVMMGVGWWLTRTLLRQMGGEPGDVVMVMRHISQGDLQQQITLKPGCRDS---MMHAIQ 260 +L+ +G+G ++R++ R + + V+V + ++ GDL QI +K +D ++ A++ Sbjct: 196 LLLSIGLGIVISRSITRPLN----EAVLVAQTVASGDLTSQINVK--SKDETGQLLQALK 249 Query: 261 RMVERVCQVVTEVRSNAESLVSTAEEVSVTAQALSRASTEQATGVEQTSEALERIHGSIL 320 M + + +V EVRS ++ + + +++ LS + EQA+ +E+T+ ++E + ++ Sbjct: 250 DMNQSLIGIVDEVRSGTATMATASNQIASGNMDLSSRTEEQASSLEETASSMEELTSTVK 309 Query: 321 STSQNARLTDQIAAAAAVEARACAATVKQMVAAI-------QQIAGKIVVIDDIAYQTNL 373 + NAR + ++ +A+ A V ++V + ++I I VID IA+QTN+ Sbjct: 310 QNADNARQANSLSLSASEIAVKGGQVVSEVVVTMNGINDSAKKITDIIGVIDGIAFQTNI 369 Query: 374 LALNATIEAAHAGEHGTGFAVVAAEVRRLAERSQAAAQEI-----DEVARHNVA--LAST 426 LALNA +EAA AGE G GFAVVA+EVR LA+RS AAA+EI D V R + L Sbjct: 370 LALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKALIDDSVGRVDTGSKLVVQ 429 Query: 427 AEEQLNSMVPTITRTSSLVQEIVESSARQSAAVSQISQAATQLAQVIQQNSLSSEELAVT 486 A + +V ++ R + ++ EI+ +S QSA + Q++QA Q+ V QQN+ EE A Sbjct: 430 AGSTMTEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIAQMDHVTQQNAALVEEAAAA 489 Query: 487 SEELNRRAVLLQTTVGFFQCE 507 + L +AV L+ TV F+ + Sbjct: 490 AGSLKDQAVKLEQTVSVFKID 510 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 148 bits (373), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 143/521 (27%), Positives = 256/521 (49%), Gaps = 22/521 (4%) Query: 8 TLTVGQRL-FVLILLAMLGLVATAVVSMRQIENVFQAASYAQARTVPSVTTLDDALGAFN 66 L + RL F LL L +V VV + +++ V +A +P + L A + Sbjct: 5 NLKISTRLSFGFALLLTL-MVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLSAVD 63 Query: 67 AIQGRVYNYLTNPDANDRGRLMQEMAVHRARMNKQLKTYTEVHVSDDADRAMLADDYAHI 126 R A D+ ++M R N +L+ E + D+ + + Sbjct: 64 VNGARTLASAKTTSAEDQAFFQKQMDKTSVRAN-ELQKEIESMIKTPEDKRLFEELVVAR 122 Query: 127 AAFEEVVQRLLGLAGQEQSADERILVILELRAAIDSVQASFARHRSYDIALGDASALTAR 186 A+ ++ Q + L + + + ++L+ ++ A+++ S + L D + + + Sbjct: 123 NAYRDIRQTVFKLKAEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEAGTSIQ 182 Query: 187 EIIANALDTVLMLAAGVMLVMMGVGWWLTRTLLRQMGGEPGDVVMVMRHISQGDLQQQIT 246 + ++ L A + + + W L ++ R + V V R ++ GDL +I Sbjct: 183 SAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLN----RAVTVARTVASGDLSAKIE 238 Query: 247 LKPGCRDS-MMHAIQRMVERVCQVVTEVRSNAESLVSTAEEVSVTAQALSRASTEQATGV 305 + +M A++ M + + + V+EVRS E++ + + +++ LS + EQA+ + Sbjct: 239 VSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQASSL 298 Query: 306 EQTSEALERIHGSILSTSQNARLTDQIAAAA---AVEARACAATVKQMVAAIQQIAGKIV 362 +T+ ++ ++ ++ + NAR + +A +A AV+ + + V +A+I + A KIV Sbjct: 299 GETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINESARKIV 358 Query: 363 ----VIDDIAYQTNLLALNATIEAAHAGEHGTGFAVVAAEVRRLAERSQAAAQEI----- 413 VID IA+QTN+LALNA +EAA AGE G GFAVVA+EVR LA+RS AAA+EI Sbjct: 359 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKILIG 418 Query: 414 DEVARHNVA--LASTAEEQLNSMVPTITRTSSLVQEIVESSARQSAAVSQISQAATQLAQ 471 D V + L + A +N +V ++ R + ++ EI+ +S QS+ + Q++QA Q+ Q Sbjct: 419 DSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAIGQMDQ 478 Query: 472 VIQQNSLSSEELAVTSEELNRRAVLLQTTVGFFQCELGQGA 512 V QQN+ EE A +E L +A L V F+ + Q A Sbjct: 479 VTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKLDGNQPA 519 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.127 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 845,707 Number of extensions: 26867 Number of successful extensions: 250 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 22 Length of query: 516 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 429 Effective length of database: 899,382 Effective search space: 385834878 Effective search space used: 385834878 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)