BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0890.p
         (345 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980628|ref|YP_001351911.1| Zn-dependent alcohol dehydrogen...    69   4e-13
gi|152980956|ref|YP_001352862.1| bifunctional glutathione-depend...    63   2e-11

>gi|152980628|ref|YP_001351911.1| Zn-dependent alcohol
           dehydrogenases, class III [Janthinobacterium sp.
           Marseille]
          Length = 368

 Score = 68.9 bits (167), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 146/346 (42%), Gaps = 33/346 (9%)

Query: 13  LRIEPLDTGALQPQQLKVKVKAGGICGSDLHYYHHGGFGVVRIKEPMVLGHEVSGQIAEV 72
           L IE +D    +  ++ V++KA GIC +D  YY   G     I  P +LGHE +G + +V
Sbjct: 15  LTIEEVDLAGPKAGEVLVEIKATGICHTD--YYTLSGADPEGIF-PAILGHEGAGVVVDV 71

Query: 73  GSAISDIAPGTRIAISPSRPCGLCKYCQEGKQNHCLDM--------------RFYGSAMR 118
           G  ++ +     +    +  C  CK+C   K N C  +              RF   +  
Sbjct: 72  GPGVTTLKKDDHVIPLYTPECRQCKFCLSRKTNLCQAIRSTQGRGLMPDATSRFSLDSKP 131

Query: 119 TPHVQG--AFRQEIII-ERSQAHIVADHVSDGEAAMAEPLSVALHAVRRAGPL-VGKRVL 174
             H  G   F   I++ E + A I  D   D    +   ++  + AV  +  +  G  V+
Sbjct: 132 LFHYMGTSTFSNYIVVPEIALAKIREDAPFDKACYIGCGVTTGVGAVVFSAKVEAGANVV 191

Query: 175 VTGCGPIGALVVVAARRAGALEVVVTDVARMPLETALKVGADRAINMAETPDALKAYAA- 233
           V G G IG  V+ AA+  GA +++  D+    +E A K G    +N  E  + +      
Sbjct: 192 VFGLGGIGLNVIQAAKMVGADKIIGVDINPGRIEMARKFGMTHFVNPKEVENVVDHIVQL 251

Query: 234 DKGTFDVLFEASGNERALVGALEALRP---QAIIVQVGLGGD--IQFPANLLVGKELDWR 288
             G  D  FE  GN   +  ALE       Q+ I+ V   G      P  L+ G+E  W+
Sbjct: 252 TDGGADYSFECIGNTTTMRQALECCHKGWGQSFIIGVAAAGQEISTRPFQLVTGRE--WK 309

Query: 289 G-AF---RFHEEFAMAVELMNRKLVDVKPLISATYPISQAVDAFEI 330
           G AF   R   +    V+      +++  LI+ T P+ +  + F++
Sbjct: 310 GSAFGGARGRTDVPKIVDWYMEGKLNIDDLITHTLPLERINEGFDL 355


>gi|152980956|ref|YP_001352862.1| bifunctional glutathione-dependent
           formaldehyde dehydrogenase /alcohol dehydrogenase class
           III oxidoreductase protein [Janthinobacterium sp.
           Marseille]
          Length = 368

 Score = 63.2 bits (152), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 147/346 (42%), Gaps = 33/346 (9%)

Query: 13  LRIEPLDTGALQPQQLKVKVKAGGICGSDLHYYHHGGFGVVRIKEPMVLGHEVSGQIAEV 72
           L IE ++ G  +  ++ V++KA GIC +D  YY   G     I  P +LGHE +G + EV
Sbjct: 15  LTIEEVELGGPREGEVLVEIKATGICHTD--YYTLSGADPEGIF-PAILGHEGAGVVVEV 71

Query: 73  GSAISDIAPGTRIAISPSRPCGLCKYCQEGKQNHCLDMRFYGSAMRTP------------ 120
           G  +  +     +    +  C  CK+C   K N C  +R        P            
Sbjct: 72  GPGVKSLKKDDHVIPLYTPECRECKFCLSRKTNLCQKIRSTQGRGLMPDATSRFSIDGKP 131

Query: 121 --HVQG--AFRQEIII-ERSQAHIVADHVSDGEAAMAEPLSVALHAVRRAGPL-VGKRVL 174
             H  G   F   I++ E + A I  D   D    +   ++  + AV     +  G  V+
Sbjct: 132 LFHYMGTSTFSNYIVVPEIALAKIREDAPFDKVCYIGCGVTTGVGAVLFTAKVEAGANVV 191

Query: 175 VTGCGPIGALVVVAARRAGALEVVVTDVARMPLETALKVGADRAINMAETPDALKAYAA- 233
           V G G IG  V+ AA+  GA +++  D+       A K G    IN ++  + + A    
Sbjct: 192 VFGLGGIGLNVIQAAKMVGADKIIGVDLNPAREAMARKFGMTHFINPSKVENVVDAIVQL 251

Query: 234 DKGTFDVLFEASGNERALVGALEALRP---QAIIVQVG-LGGDIQF-PANLLVGKELDWR 288
             G  D  FE  GN   +  ALE       Q+I++ V   G +I   P  L+ G+E  W+
Sbjct: 252 TDGGADYSFECIGNVHTMRQALECCHKGWGQSIVIGVAEAGAEISTRPFQLVTGRE--WK 309

Query: 289 G-AF---RFHEEFAMAVELMNRKLVDVKPLISATYPISQAVDAFEI 330
           G AF   R   +    V+      +++  LI+ T P+ +  + F++
Sbjct: 310 GSAFGGARGRTDVPKIVDWYMEGKLNIDDLITHTLPLERINEGFDL 355


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 762,540
Number of extensions: 30365
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 261
Effective length of database: 910,473
Effective search space: 237633453
Effective search space used: 237633453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)