BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0889.p (264 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Jant... 162 3e-41 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 148 3e-37 gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase... 128 4e-31 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 127 5e-31 gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reduc... 121 4e-29 >gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 272 Score = 162 bits (409), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 97/253 (38%), Positives = 144/253 (56%), Gaps = 7/253 (2%) Query: 16 SLEGRLALITGSSGGIGLALARGMAQAGAAIVLNGRDAGKLAKVAAQLRAEGHTIHESSF 75 + EG++AL+TG+S G+G A+ +A AGA ++L R +L ++ A++ AEG S Sbjct: 20 NFEGKVALVTGASSGLGARFAKVLAMAGAQVILASRRVDRLKELRAEIEAEGGAAQVVSL 79 Query: 76 DATSAEDVKAAVQKIESEIGAIDILVNNAGIQRRNPLEEFKESDWHDLINTNLNSVFYAA 135 D T +K+A+ E+E GAIDILVNN+G+ L + D+ +++TN F+ A Sbjct: 80 DVTDYASIKSAIAHAETETGAIDILVNNSGVSASQRLVDVTPEDYAHMMDTNQRGAFFVA 139 Query: 136 QAVARHMIPRGAG------KIINICSVQSELGRPGIAPYTATKGAVKMFTKGMAIDWGKY 189 Q VA+ MI R G +IINI SV P + Y +K AV TK MA++WGK+ Sbjct: 140 QEVAKRMIARHKGDPKKQHRIINIGSVAGLRVVPELGLYCMSKAAVVHMTKAMAVEWGKF 199 Query: 190 GIQVNGLGPGYFKTEMNMALVNDAKFTDWLVGRTPSRRWGDVEDLVGAAVFLASDASRFV 249 GI N + PGY TEMN+ + ++G P +R G EDL G + LA++ S F+ Sbjct: 200 GINTNAICPGYIGTEMNLDYFQSEQ-GQQVLGMLPRKRLGKPEDLDGLLLLLAAEESHFI 258 Query: 250 NGHILYVDGGVTA 262 NG I+ D G++A Sbjct: 259 NGAIMTADDGLSA 271 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 148 bits (374), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 87/241 (36%), Positives = 131/241 (54%), Gaps = 2/241 (0%) Query: 20 RLALITGSSGGIGLALARGMAQAGAAIVLNGRDAGKLAKVAAQLRAE-GHTIHESSFDAT 78 RLAL+TG GG+G A+ +A G +V K A +L E G+ H D + Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPGNKKADEWLKLMKESGYDFHAYPCDVS 62 Query: 79 SAEDVKAAVQKIESEIGAIDILVNNAGIQRRNPLEEFKESDWHDLINTNLNSVFYAAQAV 138 + + V +IE E+G +D+LVNNAGI R ++ + DW ++ TNL+SVF + V Sbjct: 63 DYDSAQQCVAQIEKEMGPVDVLVNNAGITRDITFKKMGKPDWDAVMATNLDSVFNMTKPV 122 Query: 139 ARHMIPRGAGKIINICSVQSELGRPGIAPYTATKGAVKMFTKGMAIDWGKYGIQVNGLGP 198 M+ RG G+IINI SV + G G Y+A K + FTK +A++ + + VN + P Sbjct: 123 CDGMVERGWGRIINISSVNGQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTISP 182 Query: 199 GYFKTEMNMALVNDAKFTDWLVGRTPSRRWGDVEDLVGAAVFLASDASRFVNGHILYVDG 258 GY T+M MA+ D T +V + P R G E++ G +LASD + F+ G + ++G Sbjct: 183 GYIGTKMVMAIPQDVLDTK-IVPQIPMGRLGKPEEIAGLVAYLASDEAAFLTGANIAING 241 Query: 259 G 259 G Sbjct: 242 G 242 >gi|152980322|ref|YP_001353173.1| 3-hydroxybutyrate dehydrogenase [Janthinobacterium sp. Marseille] Length = 264 Score = 128 bits (321), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/263 (33%), Positives = 132/263 (50%), Gaps = 12/263 (4%) Query: 12 LQGFSLEGRLALITGSSGGIGLALARGMAQAGAAIVLNGR-DAGKLAKV-AAQLRAEGHT 69 +Q L G+ AL+TGS+ GIGL +A+ +AQ GA IVLNG DA ++ + AA +R G Sbjct: 1 MQKAPLHGKTALVTGSTSGIGLGIAQALAQQGADIVLNGFGDANEIKTLQAALMRNYGVK 60 Query: 70 IHESSFDATSAEDVKAAVQKIESEIGAIDILVNNAGIQRRNPLEEFKESDWHDLINTNLN 129 D + +++A + + G +DILVNNAGIQ +E+F W +I NL+ Sbjct: 61 CVHHPADMSKPAEIEAMMAFAAQQFGRVDILVNNAGIQHTETIEDFPVEKWDAIIAINLS 120 Query: 130 SVFYAAQAVARHMIPRGAGKIINICSVQSELGRPGIAPYTATKGAVKMFTKGMAIDWGKY 189 S F+ + M + G+IINI SV +G + Y A K + TK A++ Sbjct: 121 SAFHTTRLALPMMQAKNWGRIINIASVHGLVGSVQKSAYVAAKHGIVGLTKVTALEMAHT 180 Query: 190 GIQVNGLGPGYFKTEM----------NMALVNDAKFTDWLVGRTPSRRWGDVEDLVGAAV 239 GI N + PG+ T + L ++A D + + PS + + L AV Sbjct: 181 GITCNAICPGWVLTPLVQKQVDARAAREGLSDEAAKKDLVSEKQPSGEFVTPQQLGALAV 240 Query: 240 FLASDASRFVNGHILYVDGGVTA 262 FL S+A+ V G +DGG TA Sbjct: 241 FLCSEAAVQVRGAAWNMDGGWTA 263 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 127 bits (320), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 83/244 (34%), Positives = 126/244 (51%), Gaps = 5/244 (2%) Query: 17 LEGRLALITGSSGGIGLALARGMAQAGAAIVLNGRDAGKLAKVAAQLRAEGHTIHESSFD 76 L G++AL+TG+S GIG A+A+ +A+ GA ++ A ++ L G + D Sbjct: 6 LSGQVALVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYLGNGGKGV---VLD 62 Query: 77 ATSAEDVKAAVQKIESEIGAIDILVNNAGIQRRNPLEEFKESDWHDLINTNLNSVFYAAQ 136 A A + +I+ E GA+ ILVNNAGI + K+ +W +I TNL +V ++ Sbjct: 63 VNDAARSVALIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLSR 122 Query: 137 AVARHMIPRGAGKIINICSVQSELGRPGIAPYTATKGAVKMFTKGMAIDWGKYGIQVNGL 196 AV R M+ G+IINI SV G G Y A K V ++ +A + G I VN + Sbjct: 123 AVLRGMMKAKTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNCI 182 Query: 197 GPGYFKTEMNMALVNDAKFTDWLVGRTPSRRWGDVEDLVGAAVFLASDASRFVNGHILYV 256 PG+ T+M L + L+ + P R G ED+ A FLAS + ++ G L+V Sbjct: 183 APGFIDTDMTKTL--SEQQIAALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTLHV 240 Query: 257 DGGV 260 +GG+ Sbjct: 241 NGGM 244 >gi|152981530|ref|YP_001353550.1| short chain dehydrogenase/reductase family oxidoreductase [Janthinobacterium sp. Marseille] Length = 249 Score = 121 bits (303), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 90/248 (36%), Positives = 130/248 (52%), Gaps = 7/248 (2%) Query: 17 LEGRLALITGSSGGIGLALARGMAQAGAAIVLNGRDAGKLAK-VAAQLRAEGHTIHESSF 75 L G++A + G S GIG A+ + +A+ GAA+ + AK VA ++ A G Sbjct: 7 LTGKVAFVQGGSRGIGAAIVKRLARDGAAVAFTYVSSADKAKAVAQEIEAAGGRALAIHA 66 Query: 76 DATSAEDVKAAVQKIESEIGAIDILVNNAGIQRRNPLEEFKESDWHDLINTNLNSVFYAA 135 D++ A V+ A+Q G IDILVNNAG+ P+E+FK D+ + N+ SVF A Sbjct: 67 DSSDASAVQQAIQAAAKAFGRIDILVNNAGVLALAPVEDFKLEDFDRTVAVNVRSVFVAT 126 Query: 136 QAVARHMIPRGAGKIINICSVQSE-LGRPGIAPYTATKGAVKMFTKGMAIDWGKYGIQVN 194 Q ARHM G+II I S ++ + G A Y +K A+ TKG+A D G GI VN Sbjct: 127 QEAARHMGE--GGRIITIGSTNADRMPFAGGAVYAMSKAAIVGLTKGLARDLGPRGITVN 184 Query: 195 GLGPGYFKTEMNMALVNDAKFTDWLVGRTPSRRWGDVEDLVGAAVFLASDASRFVNGHIL 254 + PG T+MN A ++ F D L G R+G E++ +LA + ++ G L Sbjct: 185 NVQPGPVDTDMNPA---NSDFADTLKGLMAIGRYGKDEEIASFVAYLAGPEAGYITGASL 241 Query: 255 YVDGGVTA 262 +DGG A Sbjct: 242 TIDGGFGA 249 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 587,454 Number of extensions: 22988 Number of successful extensions: 148 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 113 Number of HSP's successfully gapped: 23 Length of query: 264 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 182 Effective length of database: 917,867 Effective search space: 167051794 Effective search space used: 167051794 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)