BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0888.p
         (517 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980629|ref|YP_001351958.1| glycerol kinase [Janthinobacter...   161   1e-40

>gi|152980629|ref|YP_001351958.1| glycerol kinase [Janthinobacterium
           sp. Marseille]
          Length = 498

 Score =  161 bits (407), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 131/482 (27%), Positives = 210/482 (43%), Gaps = 42/482 (8%)

Query: 5   ARYMLGVDIGTTSTKTVVFTLDGKVVAQYAEEYPVICTEPGMAEQDPDQIVAAALASIGG 64
           ++++L +D GTTS++ ++F  +G++     +EYP I  EPG  E D + I  + LA    
Sbjct: 2   SQFILAIDQGTTSSRAILFNHEGQIHGVAQQEYPQIFPEPGWVEHDANAIWNSQLAVARQ 61

Query: 65  AVKAAKALPEDIALLSFSAAMHSVIALDADN-RLLCNSITWGDIRASVWAERIKHEHDGN 123
            +K  K    DIA +  +    + +  D    + + N+I W D R + + ++++ E   +
Sbjct: 62  VLKENKLSATDIAAIGITNQRETTVIWDRKTGQPIANAIVWQDRRTAAYCDQLRAEGKAD 121

Query: 124 AIYRRTGTPIHPMSPLCKLMWLRHEKPEVFQQAAR----FVGIKEYLLYQLFGQWVVDHS 179
              ++TG  +       K+ WL    P+   +A R    F  I  +L+Y+L G  + D S
Sbjct: 122 LFQQKTGLVLDSYFSGTKVKWLLDHIPDARARAERGELAFGTIDSWLVYKLSGAHLTDSS 181

Query: 180 IASATGMFNLRELAWDQGALALLGVKPEQLPTPVPTIHRLPALSPEMAQRLRLAVDTPFI 239
            AS T +FN+  L WD+  LA+  +    LP  V +         E+          P  
Sbjct: 182 NASRTLLFNIHTLQWDEELLAIFDIPASLLPAVVASSGIASHTHTEL-------FGAPIA 234

Query: 240 IG--ANDGVLSNLGVNAIEVGHVAVTIGTSGAMRTVIDEPLTDPHGRLFCYALTEKHWVV 297
           I   A D   +  G    + G    T GT   M           H  L    LT   W +
Sbjct: 235 IAGIAGDQQAATFGQACHKPGMAKNTYGTGCFMLLNTGTHAISSHNNL----LTTIGWTL 290

Query: 298 G------------GPVNNGGNIFRWVRDELATAEAAAAREEGVDPYEALTRIAEQVRPGA 345
           G            G V  GG I +W+RD L   + +A  E           +A  V P  
Sbjct: 291 GIGKAAQTNYMLEGGVFMGGAIVQWLRDGLGIIQRSADVEA----------LATSV-PDN 339

Query: 346 EGLLFHPFMAGERAPLWNANLRGSFFGLALHHGKHHMIRAALEGVIFNLYSILPALE-EL 404
            G++F P  +G  AP W++  RG+  G+     K H+ RAALE + +    +L A++ + 
Sbjct: 340 GGVVFVPAFSGLGAPYWDSYARGTILGMTRGSNKAHIARAALESIAYQSVDLLDAMQKDA 399

Query: 405 VGPTKRMMATGGFARSALWRQMMADIFNREVVVPESVESSCLGAAVLGAWALGLVPSLSV 464
              ++ +   GG +R+ L  Q  ADI N  V+ P   E++ LGAA L   A+    S   
Sbjct: 400 QSSSQELRVDGGASRNDLLMQFQADILNVPVIRPVVTETTALGAAYLAGLAVSFWQSAEE 459

Query: 465 IS 466
           I+
Sbjct: 460 IT 461


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,165,956
Number of extensions: 47849
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 430
Effective length of database: 899,382
Effective search space: 386734260
Effective search space used: 386734260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)