BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0882.p
         (233 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981888|ref|YP_001352543.1| hypothetical protein mma_0853 [...   130   6e-32

>gi|152981888|ref|YP_001352543.1| hypothetical protein mma_0853
           [Janthinobacterium sp. Marseille]
          Length = 234

 Score =  130 bits (327), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/233 (37%), Positives = 121/233 (51%), Gaps = 15/233 (6%)

Query: 6   LQQPLNDDELDRLGEFL--EEAGSPGMNIELLDGYFAALICGPEAVLPSEYLPQLLGEE- 62
           L QPL+D E D L +FL  +      M ++ L GY  AL+ GPE V  +E+LP + GE  
Sbjct: 3   LDQPLSDKEFDELDKFLLSDRTADDCMAMDSLHGYLTALVVGPEEVPLAEWLPHVWGENA 62

Query: 63  ---PPFENQEEASDILGLIMRHWNTIASTLARTLEEDMVYLPVLLEDE---HGVAHGNDW 116
              P F+N +E   I+GLI R  N IA TL    +E   Y P+  E E     V  G  W
Sbjct: 63  EAIPKFKNDKEYERIVGLIARFMNEIAITLEVAPKE---YEPLFCEHEWEGKPVLDGEAW 119

Query: 117 AQGFMHGVHCRLGAWEELLESEEFGEFMLPIFALVHEHDPDPNLRPPAITPDKRDAVLQA 176
           A GF  G+  R  AWE +  S      M PI+ L+   + +         P K   +   
Sbjct: 120 AWGFNLGMSLRAEAWEPI-NSSNIAPLMRPIY-LLGAEEIEEEEIVLVDNPIKCHKLTIE 177

Query: 177 MIVSVTHIYRYFVPHRRSAVRMTSRRAGPKISRNDPCPCGSGRKYKYCCAAGA 229
           +  ++  I+++++PHR+SAV+ T +R  PKI RND C CGSG+KYK CC A  
Sbjct: 178 IESAIPEIHKFWLPHRKSAVK-TVQREEPKIGRNDECSCGSGKKYKKCCGAAT 229


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 564,933
Number of extensions: 21913
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 153
Effective length of database: 925,261
Effective search space: 141564933
Effective search space used: 141564933
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)