BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0879.p
         (431 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980634|ref|YP_001354637.1| aspartate carbamoyltransferase ...   124   1e-29
gi|152979907|ref|YP_001352538.1| ornithine carbamoyltransferase ...    70   2e-13

>gi|152980634|ref|YP_001354637.1| aspartate carbamoyltransferase
           catalytic subunit [Janthinobacterium sp. Marseille]
          Length = 319

 Score =  124 bits (311), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 162/328 (49%), Gaps = 33/328 (10%)

Query: 86  GRLSHLLSVDQFSRDSAEHLFMLADVMQPIARRR-KVSRVLEGAVLANLFFEASTRTRLS 144
           G L HLL+++   + +  H+   A     I  R  K   ++ G  + NLFFE STRTR +
Sbjct: 10  GELQHLLTIEGLPKANILHILDTASSFVSIGDREVKKVPLMRGKSVFNLFFENSTRTRTT 69

Query: 145 FASAFMRLGGSVCDTTGFTYSSMAKGESIADTSRTVSG-YADVIVVRHPEQGSVAQFA-- 201
           F  A  RL   V +      SS +KGES+ DT   +S  +AD+ VVRH + G+    A  
Sbjct: 70  FEIASKRLSADVINLN-IQASSSSKGESLLDTIDNLSAMHADMFVVRHAQSGAPYLIAKH 128

Query: 202 ----AATQVPLINGGDGAGEHPTQALIDLYTV---QREFSRLGKLVDGAHIVITGDLKYG 254
               + + V ++N GDG   HPTQ L+D+YT+   +++FS L        + I GD+ + 
Sbjct: 129 LSDTSQSHVHVVNAGDGRHAHPTQGLLDMYTIRHYKKDFSNLT-------VAIVGDILHS 181

Query: 255 RTAHSLIKLLSLYRNMRFTLVSPPSLEMPAEIVKRIAARGHTVTSTDVLAHALPDADVIY 314
           R A S I  L+         + P +L +P+ + +++  R      TD+    L D DVI 
Sbjct: 182 RVARSDIHALTTLGVPEIRAIGPRTL-LPSGL-EQMGVR----VFTDI-NKGLKDVDVII 234

Query: 315 TTRIQRERLTGEKI---DDFLAAFEINKKLVDQHGRPDVIVMHPLPRDSRPGAHDLHTDL 371
             R+Q ER++G  +    +F  ++ +  + +    +PD IVMHP P +      ++ + +
Sbjct: 235 MLRLQNERMSGALLPSAQEFFKSYGLTTERLAL-AKPDAIVMHPGPMNR---GVEIESAV 290

Query: 372 DGDARLAIFRQTDNGVPVRMAIFATLLG 399
               +  I  Q   G+ VRMA+ + L G
Sbjct: 291 ADGTQAVILPQVTFGIAVRMAVMSILAG 318


>gi|152979907|ref|YP_001352538.1| ornithine carbamoyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 304

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 3/154 (1%)

Query: 88  LSHLLSVDQFSRDSAEHLFMLADVMQPIARRRKVSRVLEGAVLANLFFEASTRTRLSFAS 147
           + H L     + D  EH+     V++   +  +    L    L  +F + STRTRLSF +
Sbjct: 3   IKHFLQFSDLTLDEFEHVIERTRVIKRKFKNYEPYHPLSDRTLVMVFEKNSTRTRLSFEA 62

Query: 148 AFMRLGGSVCDTTGFTYSSMAKGESIADTSRTVSGYADVIVVRHPEQGSVAQFAAATQVP 207
              +LGG+         S + +GE + D ++ +S   D+I++R   Q  + +FAA ++VP
Sbjct: 63  GMHQLGGAAIYLNTRD-SQLGRGEPVEDAAQVMSRMCDIIMIRTFGQEIIERFAANSRVP 121

Query: 208 LINGGDGAGEHPTQALIDLYT-VQREFSRLGKLV 240
           +ING      HP Q L D++T +++  S  GK V
Sbjct: 122 VINGLTNE-HHPCQVLADVFTYIEQRGSIKGKTV 154


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 947,879
Number of extensions: 38064
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 2
Length of query: 431
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 345
Effective length of database: 903,079
Effective search space: 311562255
Effective search space used: 311562255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)