BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0878.p (526 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981144|ref|YP_001352922.1| GntR family transcriptional reg... 320 1e-88 gi|152981038|ref|YP_001353695.1| GntR family transcriptional reg... 287 1e-78 gi|152983061|ref|YP_001352668.1| GntR family transcriptional reg... 217 1e-57 gi|152980994|ref|YP_001352392.1| transcriptional regulator [Jant... 147 1e-36 gi|152981206|ref|YP_001352388.1| GntR family transcriptional reg... 129 3e-31 >gi|152981144|ref|YP_001352922.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 477 Score = 320 bits (820), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 186/460 (40%), Positives = 265/460 (57%), Gaps = 15/460 (3%) Query: 51 PVNRQIYQLIREAILAHTLPAGMQLPSSRDLALELGTSRNTVTYAYEQLLAEGYLESRTG 110 P+ QI Q + AI L AG ++P+ R LA E+ +R TV AY L EGYL+ R Sbjct: 19 PMYLQICQRFKTAIERGHLHAGDRVPAVRALATEMNLARGTVEMAYRILTDEGYLQVRGA 78 Query: 111 AGTFVADTAPDQIPEAVERVEPLTDPSGKSELSARGALLTRQAGVGERQWGAFMPGVPDV 170 AGT V+ + P P A + + P+ + + L G + G+P + Sbjct: 79 AGTIVSPSLPQ--PAASKPLTPMPGQTVSAFLDHDG-----------KAPKPLQLGLPAL 125 Query: 171 TCVPHKIWGRLQNKHWRRSNSDLLTYGPGAGYTGLREQIAEYLRVARSVNCTPSQVLITT 230 P K+W RL R S L Y AGY LRE+IA YL V+R V C P QV ITT Sbjct: 126 DAFPRKVWNRLVGHRLRGSEPARLGYPDPAGYDRLRERIATYLGVSRGVTCLPEQVFITT 185 Query: 231 GIHQSIDIVVKLLGEHGDTAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGMRMRLANLRR 290 G+ ++++ + L GD W EDP Y R L + ++ VP+ VD G+ + Sbjct: 186 GLRNTLELTLSSLSTSGDEFWFEDPGYILARPFLQNAAVKVVPVPVDGNGLIVEEGKRLS 245 Query: 291 P-PRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYGGRPLASLQG 349 P +F TPSHQ PLG+ +SL RR LLE+A+ WIIEDDYDSEFRY GRPL +L+ Sbjct: 246 PYAKFAMVTPSHQSPLGVTLSLERRMALLEWASEAGSWIIEDDYDSEFRYQGRPLPALKS 305 Query: 350 MDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLAQAFATGIAELYRNGQVFLQATLADFMA 409 +D DRV+Y GTFSK+MFPGLR+ ++V P S F + L QA++ADF+A Sbjct: 306 LDRNDRVIYSGTFSKVMFPGLRLAYVVAPVSAVARFQSVSYNLNAGCPYLFQASVADFIA 365 Query: 410 EGHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGLPQECDDVLICE 469 EGHF+ H++KMR LYAER + QQ G+++ I GLH++ L + +DVL+ + Sbjct: 366 EGHFSRHLKKMRSLYAERRLVTQQVFQEVLGDRIRIDLRPGGLHMLAKLGEHENDVLLAD 425 Query: 470 QALQAGIVVRPLSRYYMHARGARRGLLLGYASVPNDEIAR 509 +A +AG+ + PLSR+Y++A+ ++GLLLG+A+V +++ A+ Sbjct: 426 KAREAGLALHPLSRWYVNAK-PQQGLLLGFANVVDEKDAK 464 >gi|152981038|ref|YP_001353695.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 502 Score = 287 bits (734), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 167/477 (35%), Positives = 264/477 (55%), Gaps = 12/477 (2%) Query: 51 PVNRQIYQLIREAILAHTLPAGMQLPSSRDLALELGTSRNTVTYAYEQLLAEGYLESRTG 110 P++ ++ + IR+ IL L G LP+SR LA LG SR+TV AY QL AEG++E R G Sbjct: 23 PLHARVQRAIRQLILDGALDVGRPLPASRALAQSLGVSRDTVESAYGQLHAEGFIERRVG 82 Query: 111 AGTFVADTAPDQIPEAVERVEPLTDPSGKSELSARGALLTRQAGVGERQWGA---FMPGV 167 +G++V++ ++P + + + LS RG + + GV R + F PGV Sbjct: 83 SGSYVSERM-QRLPGRGRPRRTVVERGTTTRLSQRGKAMFQSGGV--RDFFTPRPFAPGV 139 Query: 168 PDVTCVPHKIWGRLQNKHWRRSNSDLLTYGPGAGYTGLREQIAEYLRVARSVNCTPSQVL 227 P+ P + W RLQ + + + L + P G LR IA+Y+ + R +P +VL Sbjct: 140 PETRSFPLQTWERLQRQVLKEYGTQALLHSPPQGMEQLRRAIADYVNLERGARASPERVL 199 Query: 228 ITTGIHQSIDIVVKLLGEHGDTAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGMRM-RLA 286 + T Q++ + +L + G+ ++EDP Y G R ++ G++ VP+ +D +G+R+ R+ Sbjct: 200 VLTSSQQALTLCATVLLDAGERIFIEDPVYHGARKAFDAAGLECVPVPLDADGLRVERML 259 Query: 287 NLRRP----PRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYGGR 342 L + PR + TPSHQ+P G ++L RR ++E+A + WIIEDDYDSEF Y G+ Sbjct: 260 ELAQTTDQVPRAVFLTPSHQFPTGATLALDRRLAVIEWARQQQGWIIEDDYDSEFHYDGK 319 Query: 343 PLASLQGMDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLAQAFATGIAELYRNGQVFLQA 402 P A +QG+D +R +Y+GTF+K +FPGLRIG++V+P L L + Q Sbjct: 320 PTACVQGLDQYERTIYIGTFTKSLFPGLRIGYMVLPSQLVAPMTVARTLLDGHSAPIPQL 379 Query: 403 TLADFMAEGHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGLPQEC 462 TLA F+ GHF +HIR MR +YAER +L + + H + + G+ + ++ Sbjct: 380 TLARFIEGGHFGAHIRTMRAVYAERRDVLVRLVRLHLSDFVEARVPTGGMQMSCVFIRDI 439 Query: 463 DDVLICEQALQAGIVVRPLSRYYMHARGARRGLLLGYASVPNDEIARAFDKLAAVIK 519 + E A +AGI V L+ + R + GLL+G+A+ E+ A KLA V++ Sbjct: 440 PEHAAVEAARKAGIDVLGLTGLHASKR-HKTGLLMGFAAHAPHELEIAIRKLAQVLR 495 >gi|152983061|ref|YP_001352668.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 469 Score = 217 bits (552), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 161/472 (34%), Positives = 244/472 (51%), Gaps = 28/472 (5%) Query: 52 VNRQIYQLIREAILAHTLPAGMQLPSSRDLALELGTSRNTVTYAYEQLLAEGYLESRTGA 111 ++ QI I AI + L G +LPS + LA +LG +R TV AYE+L +E+ Sbjct: 17 LSEQICVSICRAIESGLLAPGTRLPSWQGLAAQLGVARGTVQAAYERLSDSQMIETFGAK 76 Query: 112 GTFVADTAPDQIPEAVERVEP-LTDPSGKSELSARGALLT--RQAGVGERQWGAFMPGVP 168 GT RV P L +GK E GA + ++ G F G+P Sbjct: 77 GT---------------RVAPRLHTTAGKPEAPQPGAFMKTYQEMMAGP---AIFQLGIP 118 Query: 169 DVTCVPHKIWGRLQNKHWRRSNS-DLLTYGPGAGYTGLREQIAEYLRVARSVNCTPSQVL 227 + P K++ R ++ + ++ S L Y G LR+++A YL ++R+++C P QV Sbjct: 119 AMEGFPDKLFARARSSNLLKTGSFSSLVYPDPRGEIELRKEVAGYLSISRNLHCFPEQVF 178 Query: 228 ITTGIHQSIDIVVKLLGEHGDTAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGMRMRLA- 286 IT+G + +V+++LG G W+E+P + TR L + VP+ VD EG+ + Sbjct: 179 ITSGYSSGLGLVLRVLGLDGRKVWMEEPGFLLTRKGLELARLNIVPVPVDAEGLDVDYGI 238 Query: 287 NLRRPPRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYGGRPLAS 346 TP Q PLG +SL RR LLE+AA + WIIEDDY SE + GRP + Sbjct: 239 KNAADAALAVVTPGQQAPLGTTLSLRRRLQLLEWAAANNAWIIEDDYLSELQLEGRPAPA 298 Query: 347 LQGMDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLAQAFATGIAELYRNGQVFLQATLAD 406 L +D RV+++G+FSK + PGLR+GF+VVP LA+AF+ +A L +Q A Sbjct: 299 LASLDEGKRVIHIGSFSKTISPGLRLGFVVVPVELAEAFSEIVATLAPAPSPVIQLATAQ 358 Query: 407 FMAEGHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGLPQECDDVL 466 FM +GH+ +R+++ LY+ + L + + E + +AGL ++L LP DV Sbjct: 359 FMHDGHYIQRVRRLKRLYSAQSDGLCEQLRMRDAEWI-----KAGLAVLLRLPAGAPDVQ 413 Query: 467 ICEQALQAGIVVRPLSRYYMHARGARRGLLLGYASVPNDEIARAFDKLAAVI 518 I +A GI PLS ++ A GLLLG AS P +A++ +L +I Sbjct: 414 IVREARNIGIAPSPLSAWFATPSRALPGLLLGIASAPERYVAKSCRQLFEII 465 >gi|152980994|ref|YP_001352392.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 397 Score = 147 bits (372), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 102/360 (28%), Positives = 169/360 (46%), Gaps = 8/360 (2%) Query: 162 AFMPGVPDVTCVPHKIWGRLQNKHWRRSNSDLLTYGPGAGYTGLREQIAEYLRVARSVNC 221 +F G+P P + + R L YGP GY LRE IA+ L + Sbjct: 39 SFAGGLPSPETFPVEHMKAAFDNVLSRQGKIALQYGPSDGYAPLREWIADSLSI-EGATI 97 Query: 222 TPSQVLITTGIHQSIDIVVKLLGEHGDTAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGM 281 TP QVL+ +G Q++D++ K+L E VE P Y G + Q V + D G+ Sbjct: 98 TPDQVLMVSGSQQALDLLGKVLIEENSKVLVETPSYLGALQAFSVYQPQFVSVPTDDYGL 157 Query: 282 RMRLAN-LRRPPRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYG 340 + + R + P+ P G MS+ RR L+E A + +IEDD Y Sbjct: 158 LPEAVDGIADGARLLYALPNFHNPTGRTMSVERRIALVETCARRGLPLIEDDPYGALSYR 217 Query: 341 GRPLASLQGMDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLAQAF--ATGIAELYRNGQV 398 PL + M+ V+YMG+FSK++ PG+R+G++V P L + A A+L+ + Sbjct: 218 AEPLPKMLTMNPSG-VIYMGSFSKVLTPGIRLGYVVGPTPLIRKLEQAKQAADLHTSQ-- 274 Query: 399 FLQATLADFMAEGHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGL 458 Q + + + +G A HI +R LYA + Q++ ++ E + E G+ + + L Sbjct: 275 LTQMVVYEAIKDGFLAEHIPSIRTLYANQCQVMLDALAEFAPEGVKWNKPEGGMFIWVTL 334 Query: 459 PQECDDVLICEQALQAGIVVRPLSRYYMHARGARRGLLLGYASVPNDEIARAFDKLAAVI 518 P+ D + + E+A+ + P + +Y + + L L + +VP ++I KLA +I Sbjct: 335 PKHIDCMQLLEEAIAQKVAFVPGAPFYAN-EPEKNTLRLSFVTVPPEKIREGVSKLAKLI 393 >gi|152981206|ref|YP_001352388.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 488 Score = 129 bits (325), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 128/448 (28%), Positives = 204/448 (45%), Gaps = 43/448 (9%) Query: 55 QIYQLIREAILAHTLPAGMQLPSSRDLALELGTSRNTVTYAYEQLLAEGYLESRTGAGTF 114 QI QLI I L G ++PS R + + SR TV AY++L+A G LESR G+G + Sbjct: 33 QIVQLITSRIDDKILRTGARMPSIRQFSDQHQVSRFTVVEAYDRLVAGGLLESRRGSGFY 92 Query: 115 VADTAPDQIPEAVERVEPLTDPSGKSELSARGALLTRQAGVGERQWGAFMPGVPDVTCVP 174 V D AP P A P L + RQ + MPGV +P Sbjct: 93 VRDRAPMLTPRAQGLQSAAQQPVDVVWLVRN---MFRQLPPQK------MPGV---GLLP 140 Query: 175 HKIW--GRLQNKHWR---RSNSDLL-TYGPGAGYTGLREQIAEYLRVAR-SVNCTPSQVL 227 ++ W G L R R N +LL YG G+ LR+Q+ L++A ++ TP Q + Sbjct: 141 NE-WLDGDLVANALRAVSRQNPNLLLQYGIPQGFLPLRQQLQ--LKMAELEISATPDQFV 197 Query: 228 ITTGIHQSIDIVVKLLGEHGDTAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGMRM---- 283 T G+ Q +D+V + + GDT +V+DP ++ +LG + V I +G + Sbjct: 198 TTAGVTQGLDLVARHYIQPGDTIFVDDPGWFLMFGSFAALGAKVVGIPRLPDGPDIAQLT 257 Query: 284 RLANLRRPPRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYGGRP 343 LA L RP FI + H P +S ++ +L+ A + I+EDD + G Sbjct: 258 ALAELHRPKLFIINSILHN-PTSTSLSAAKAFQVLKIAEQYDFMIVEDDIYCDMHPGAAV 316 Query: 344 LAS--LQGMDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLAQAFATGIAELYRNGQVFLQ 401 A+ + +D +RV+Y+G FSK + LR+GF+ +A+ A + Sbjct: 317 QAATRIAALDQLNRVIYLGGFSKTLAANLRVGFIATSPEIARQLADRKMLTALTTTEITE 376 Query: 402 ATLADFMAEGHFASHIRKMRV-LYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGL-- 458 + ++EGH+ H ++R L A R + ++Q M G + H G+ Sbjct: 377 RVVYRILSEGHYRKHTDRLRTKLNAVRDKTIRQ---------MERIGIKIHFHTPAGMFA 427 Query: 459 --PQECDDVLICEQALQAGIVVRPLSRY 484 CD ++ E+A++ G ++ P S + Sbjct: 428 WTDVGCDATILAEKAMEQGYLLAPGSLF 455 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,198,542 Number of extensions: 51378 Number of successful extensions: 167 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 149 Number of HSP's successfully gapped: 7 Length of query: 526 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 438 Effective length of database: 895,685 Effective search space: 392310030 Effective search space used: 392310030 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)