BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0876.p (380 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 276 1e-75 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 204 7e-54 gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 189 2e-49 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 160 1e-40 gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPa... 145 3e-36 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 276 bits (707), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 139/299 (46%), Positives = 191/299 (63%), Gaps = 3/299 (1%) Query: 37 GENLIVKSLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRLDGQLLNRVPPH 96 G+N +V ++ L I GEF TLLGPSG GKTT L M+AGF+ P G+I LDG L VPP Sbjct: 14 GDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQILLDGVDLTGVPPE 73 Query: 97 KRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMVQMGKFGDRYPTQ 156 +R + VFQNYALFPHMT+ N+A+PL + +A + KV +AL+ V++ F RYP + Sbjct: 74 QRPVRTVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQKKVDEALEDVRLTGFAARYPHE 133 Query: 157 LSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHKRLGVTFVYVTHD 216 LSGGQ+QRV++AR LV P+L+L+DEPL ALD QLRE MQ+EL L K +G+TF+YVTHD Sbjct: 134 LSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEVGITFIYVTHD 193 Query: 217 QSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNRFKGSVESVQGEHCT 276 Q+EAL +S R+AV ++G ++QL T +Y YP ++FVA+FIG N F G V + G Sbjct: 194 QAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVADFIGTCNLFDGVVTQIDGNMMW 253 Query: 277 VRLADGTVVTGLNVHRAHAGQAITACVRPERIRLAAG---GSAEPNAIRASIAGLIYFG 332 + + V G T +RPE+ +++A G + N + L+Y G Sbjct: 254 LDVPGMGAVKAFTAPSVTVGSKGTIALRPEKTQVSAEIVRGVPDENHFDGYVKELLYMG 312 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 204 bits (519), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 101/246 (41%), Positives = 160/246 (65%), Gaps = 5/246 (2%) Query: 26 VQFCGVKKTYDGENLIVKSLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRL 85 ++ ++K + G + + ++ LD GE LLGPSG GKTT L ++AG E P G++ L Sbjct: 3 IEVKNIQKQF-GNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLL 61 Query: 86 DGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQA----L 141 DG+ + +R +G VFQ+YALF HMT+ +N+A+ L VR E+++K+ L Sbjct: 62 DGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEKVTKLL 121 Query: 142 DMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKA 201 ++VQ+ DRYP QLSGGQ+QR+ALAR L +P+++L+DEP GALD ++R+ ++ L+ Sbjct: 122 ELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRR 181 Query: 202 LHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNN 261 LH L VT ++VTHDQ EAL ++D++ + ++G ++Q+ ++Y P + FV F+G+ N Sbjct: 182 LHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGFLGNVN 241 Query: 262 RFKGSV 267 F G V Sbjct: 242 LFHGRV 247 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 189 bits (480), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 112/291 (38%), Positives = 160/291 (54%), Gaps = 7/291 (2%) Query: 41 IVKSLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEIRLDGQLLNRVP----PH 96 IV SL ++RGE LLG SG GKTT L +AGFE G I L G+ L+ P Sbjct: 29 IVHSLSFALQRGEIGCLLGQSGCGKTTVLRAIAGFESLIAGRITLGGKELSNAQHTTVPE 88 Query: 97 KRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALDMVQMGKFGDRYPTQ 156 R++G+VFQ+YALFPH++++ N+ + L RK+ A R ++ + L +V + ++P + Sbjct: 89 ARHVGVVFQDYALFPHLSVSDNIGFGL--RKLAAAERNGRINKLLALVGLQAQEKKFPHE 146 Query: 157 LSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKALHKRLGVTFVYVTHD 216 LSGGQQQRVALAR L P L+L+DEP LD LRE + E++ + K +G T V VTHD Sbjct: 147 LSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTHD 206 Query: 217 QSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVANFIGDNNRFKGSVESVQGEHCT 276 Q EA ++D++ V GVI Q LY P N+FVA+FIG G+V+ Q + Sbjct: 207 QHEAFAIADQIGVMQDGVIVQWDQAYNLYHRPANRFVADFIGLGVFVPGTVDK-QRQDVA 265 Query: 277 VRLADGTVVTGLNVHRAHAGQAITACVRPERIRLAAGGSAEPNAIRASIAG 327 + L + GL V A+ +R + + + IR + G Sbjct: 266 IELGTLPLCQGLPVCEVDDQNAVDVLLRADDVIHDDNSPLKAEVIRKAFRG 316 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 160 bits (405), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 87/211 (41%), Positives = 125/211 (59%), Gaps = 6/211 (2%) Query: 26 VQFCGVKKTYDGENLIVKSL---DLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGE 82 + GV K + V++L +L I +GEF+ L+G SG GK+T L ++AGFE + G Sbjct: 14 IDIKGVSKVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTSSGS 73 Query: 83 IRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQALD 142 + G ++ P + GMVFQ+Y LFP +T+ +N+ + R + +A E D Sbjct: 74 ANMYGMPIDGPSPER---GMVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAYYTD 130 Query: 143 MVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKAL 202 MV + KF + YP QLSGG +QRVA+AR L D +++LMDEP GALD RE +Q +L + Sbjct: 131 MVGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDLLEI 190 Query: 203 HKRLGVTFVYVTHDQSEALTMSDRVAVFDQG 233 +R VT V+VTH EA+ +SDRV V G Sbjct: 191 WERTKVTVVFVTHAVEEAVMLSDRVVVMTAG 221 >gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 145 bits (367), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 124/209 (59%), Gaps = 9/209 (4%) Query: 25 LVQFCGVKKTYDGENL-IVKSLDLDIRRGEFLTLLGPSGSGKTTCLMMLAGFEFPTGGEI 83 +++F + + G + +++ L L I GEF+ ++G SG GK+T L AG P+ G++ Sbjct: 4 IIEFDRIAYLHPGASAPVIQDLSLTIEAGEFVAIVGGSGVGKSTLLRAAAGLIAPSSGDV 63 Query: 84 RLDGQLLNRVP--PHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRATREAKVKQAL 141 +L ++P P +R +VFQ+ L P T+A NVAY L + +++++KQAL Sbjct: 64 QL------KLPQLPGRRRRAVVFQDGRLLPWRTVADNVAYGLETLGISADEQQSRIKQAL 117 Query: 142 DMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLREHMQLELKA 201 + + +FG+R+P QLSGGQ QRV +AR L P L+LMDEP A+D R ++Q EL Sbjct: 118 QLTGLAEFGERWPHQLSGGQVQRVGIARALAVQPDLLLMDEPFSAVDALTRRNLQAELIR 177 Query: 202 LHKRLGVTFVYVTHDQSEALTMSDRVAVF 230 + + ++VTHD EA+ ++DRV V Sbjct: 178 IWQATQSAVMFVTHDIDEAVFLADRVIVL 206 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 863,892 Number of extensions: 35342 Number of successful extensions: 299 Number of sequences better than 1.0e-08: 62 Number of HSP's gapped: 211 Number of HSP's successfully gapped: 66 Length of query: 380 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 295 Effective length of database: 906,776 Effective search space: 267498920 Effective search space used: 267498920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)