BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0874.p
         (426 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979981|ref|YP_001354795.1| spermidine/putrescine transport...   122   5e-29

>gi|152979981|ref|YP_001354795.1| spermidine/putrescine transport
           system permease protein [Janthinobacterium sp.
           Marseille]
          Length = 321

 Score =  122 bits (305), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 119/214 (55%), Gaps = 4/214 (1%)

Query: 195 IEAASP--ESAIYRTIFGRTLWMSAVVTCFALLLAYPLAYWLSTMPERRANLLMILVLIP 252
           +E+ +P     IY  IF ++L  + + T   L +AYPLA  ++  P++  NLL++LV++P
Sbjct: 85  LESFTPFFTDFIYTAIFLKSLLFAVITTLVCLTMAYPLALLIARSPQKWRNLLVLLVILP 144

Query: 253 FWTSILVRVAAWIVLLQSEGLVNKAL--MLAGLTQSPLELVFNRVGVYISMTHILLPFMI 310
           FW++ L+R+ AW++LL  +  + + L  +L      P+ L+++   V + + ++ LPFM+
Sbjct: 145 FWSNFLIRIYAWMILLGPQSALTRGLNAVLDVFGFEPVTLLYSAFAVIVGLVYVHLPFMV 204

Query: 311 LPLYSVMKSVPPTYLKAAVSLGSHPFAAFWRVYVPQTYPGVGAGVLLVFIMAGGYYITPA 370
           LPLY+ ++   P  L AA  LG+  +  FWRV  P + PG+ AG  LVFI A G +    
Sbjct: 205 LPLYANLEKHDPALLDAAQDLGAGKWQTFWRVTFPLSLPGIYAGAALVFIPALGIFAVSD 264

Query: 371 LLGGPNEQMVSYFIAYFINTTINWGMACALGALL 404
           +LGG    M+   I      + +W     L  +L
Sbjct: 265 ILGGTGGIMIGNVIKQQFLDSRDWPFGSVLSIML 298


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 846,905
Number of extensions: 31032
Number of successful extensions: 149
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 3
Length of query: 426
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 340
Effective length of database: 903,079
Effective search space: 307046860
Effective search space used: 307046860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)