BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0873.p (277 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980487|ref|YP_001354794.1| spermidine/putrescine transport... 159 2e-40 gi|152980049|ref|YP_001352502.1| sulfate transport system permea... 77 1e-15 gi|152980225|ref|YP_001354281.1| sulfate transport system permea... 73 2e-14 gi|152980950|ref|YP_001352503.1| sulfate ABC transporter, permea... 64 1e-11 >gi|152980487|ref|YP_001354794.1| spermidine/putrescine transport system permease protein [Janthinobacterium sp. Marseille] Length = 259 Score = 159 bits (401), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 145/228 (63%), Gaps = 4/228 (1%) Query: 27 LLVLLFLVLPILVMIPLSFSDSSFLMYPIQGFSLRWYQNLFTSDDWIRAAQNSFIVAPAA 86 +LV FL +P+ +++ SF+DS L GF+L WY+ LF +++ +RAA NS I+A + Sbjct: 16 VLVYAFLYVPLAIVVVYSFNDSR-LNAEWVGFTLDWYRTLFANEEMLRAAGNSLIIALVS 74 Query: 87 TVIATVLGTLAAVGLNKADFRGKGILMAILISPMIVPVVVVGVGVYLFFARIGLSDSYLG 146 + ++T+LGT+A L++ R +L ++++P+ +P ++VGV + +FF + L+ L Sbjct: 75 SAVSTLLGTMAGFALHRYKIR---LLQVLVLTPIAIPEILVGVSLLIFFVMLNLTLGMLS 131 Query: 147 LILAHAALGAPFVVTTVLATLQGFNHNLVRASLSLGASPLRTFFRITLPVIAPGLISGAL 206 + LAH A FV V + L G + +L A+ GA+P + F R+TLP+I PG+++GAL Sbjct: 132 VTLAHIAFSMGFVAIVVRSRLSGMDESLTEAARDCGATPWQAFRRVTLPLIMPGVVAGAL 191 Query: 207 FAFATSFDEVVLTLFVAGPEQATLPRQMFAGIKDNISPTIAALATILI 254 AF S D+ V+T F AG +TLP Q+++ IK ++P + A++T+L+ Sbjct: 192 MAFTLSIDDFVITFFTAGANTSTLPLQIYSMIKIAVTPEVNAVSTLLM 239 >gi|152980049|ref|YP_001352502.1| sulfate transport system permease protein [Janthinobacterium sp. Marseille] Length = 287 Score = 77.4 bits (189), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 84/278 (30%), Positives = 132/278 (47%), Gaps = 32/278 (11%) Query: 21 ASR---SFNL-LVLLFLVLPILVMIPLSFSDSSFLMYPIQGFSLRW--YQNLFTSDDWIR 74 ASR FNL L L ++V+IPLS + FL + F++ W + TSD I Sbjct: 14 ASRVLPGFNLSLGFTIFYLSLIVLIPLS---AVFL----KTFTMSWDAFVAAVTSDRVIA 66 Query: 75 AAQNSFIVAPAATVIATVLGTLAAVGLNKADFRGKGILMAILISPMIVPVVVVGV----- 129 + + SF + V+ G + A L + F GK I+ A++ P +P V G+ Sbjct: 67 SYKLSFGASLIGAVLNAFFGGIVAWVLVRYKFPGKKIIDAMVDLPFALPTAVAGIALTAL 126 Query: 130 -------GVYLFFARIGLSDSYLGLILAHAALGAPFVVTTVLATLQGFNHNLVRASLSLG 182 G YL I ++ + LG+I+A +G PFVV TV L+ L A+ SLG Sbjct: 127 YSPNGWIGRYLEAIGIKVAFTPLGVIIALTFIGLPFVVRTVQPVLEDMEKELEEAAASLG 186 Query: 183 ASPLRTFFRITLPVIAPGLISGALFAFATSFDEVVLTLFVAG--PEQATL-PRQMFAGIK 239 AS +TF ++ P + P L++G AFA + E +F+AG P + + P + ++ Sbjct: 187 ASHWQTFTKVIFPTVFPALLTGFALAFARATGEYGSVIFIAGNMPMVSEITPLFIVTKLE 246 Query: 240 DNISPTIAALATILILFSTCLLLALE----WLRGRNKA 273 A+A +++L S +LL + W R R +A Sbjct: 247 QYDYAGATAIAVVMLLASFLMLLTINLLQAWTRKRGQA 284 >gi|152980225|ref|YP_001354281.1| sulfate transport system permease protein [Janthinobacterium sp. Marseille] Length = 260 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 126/256 (49%), Gaps = 26/256 (10%) Query: 33 LVLPILVMIPLSFSDSSFLMYPIQGFSLRWYQNLFTSDDWIRAAQNSFIVAPAA---TVI 89 L + +++++P+S + L+Y + G S W Q F D R Q+ I A T+I Sbjct: 8 LYISLVILLPIS----ALLLY-VSGMS--WDQYWFAITD-ARVLQSYKITIQGAFYSTII 59 Query: 90 ATVLGTLAAVGLNKADFRGKGILMAILISPMIVPVVVVGV------------GVYLFFAR 137 T +G L A + + DF G+ ++ +++ P +P V G+ G + Sbjct: 60 VTFIGFLLAWIITRYDFPGRRLIDSLVDLPFALPTSVAGITLSALFIPTGWLGQWFEIFG 119 Query: 138 IGLSDSYLGLILAHAALGAPFVVTTVLATLQGFNHNLVRASLSLGASPLRTFFRITLPVI 197 I +S ++ G+++A PF+V +V L+ L A+L LGA+ + F+R+ LP + Sbjct: 120 IKISYAFPGIVVAMTFTSLPFIVRSVQPVLEDMEKELEEAALMLGANKWQIFWRVILPTL 179 Query: 198 APGLISGALFAFATSFDEVVLTLFVAGP---EQATLPRQMFAGIKDNISPTIAALATILI 254 P LI+G+ AF S E + +AG E +F +++ P AA+A++++ Sbjct: 180 IPALITGSSQAFIRSLGEFGAVIMIAGNIPFETEVTSLMLFVRLQEYNYPAAAAIASVVL 239 Query: 255 LFSTCLLLALEWLRGR 270 L S LL L+ ++GR Sbjct: 240 LASLILLFLLQVVQGR 255 >gi|152980950|ref|YP_001352503.1| sulfate ABC transporter, permease protein [Janthinobacterium sp. Marseille] Length = 302 Score = 63.5 bits (153), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 19/223 (8%) Query: 69 SDDWIRAAQNSFIVAPAATVIATVLGTLAAVGLNKADFRGKGILMAILISPMIVPVVVVG 128 +D + A + + + A A + V G A+ + K DFRGK IL+ ++ P V V+ G Sbjct: 73 EEDAVSAIKLTLLTAAIAVPLNLVFGVAASWCIAKFDFRGKSILLTLIDLPFSVSPVISG 132 Query: 129 VGVYLFFARIGLSDSYL------------GLILAHAALGAPFVVTTVLATLQGFNHNLVR 176 + L F G +L G++LA + PFV ++ +Q Sbjct: 133 LIYVLLFGAQGWFGGWLQEHNIKILFAVPGIVLATIFVTFPFVARELIPLMQSQGSEEEE 192 Query: 177 ASLSLGASPLRTFFRITLPVIAPGLISGALFAFATSFDEVVLTLFVAGP---EQATLPRQ 233 A+L LGAS +TF+ +TLP I GL+ G + A + E V+G + T+P Q Sbjct: 193 AALVLGASGWKTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGQTNTIPLQ 252 Query: 234 ---MFAGIKDNISPTIAALATILILFSTCLLLALEW-LRGRNK 272 ++ + + + +A+L +L L + L +EW LR ++ Sbjct: 253 VEILYNEYQFSAAFAVASLLAMLALVTLALKSFIEWRLRDTHE 295 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.330 0.142 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 490,760 Number of extensions: 15480 Number of successful extensions: 84 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 80 Number of HSP's successfully gapped: 6 Length of query: 277 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 195 Effective length of database: 917,867 Effective search space: 178984065 Effective search space used: 178984065 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 129 (54.3 bits)