BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0872.p (485 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrog... 649 0.0 gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde deh... 184 1e-47 gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogen... 160 2e-40 >gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrogenase (NADP+) [Janthinobacterium sp. Marseille] Length = 490 Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/485 (65%), Positives = 389/485 (80%), Gaps = 5/485 (1%) Query: 4 QLKDPSLLRQQAYLNGAWCDADSGAKLEVHNPANGQLLGHVPLMGATETRRAIDAANAAW 63 QLKDP++LR AY+NGAW A +V+NPA+G + VP +GA ET +AI AA+AA+ Sbjct: 8 QLKDPTILRNHAYINGAWVTGK--ASFDVNNPADGSKITDVPNLGAQETEQAIQAAHAAF 65 Query: 64 PAWKKKTAKERSALLRRWYELMLANADDLALIMTAEQGKPLAEARGEIGYAASFIEWFAE 123 PAW KT KER+ ++R W++L++ANADDLA +MTAEQGKPL E+RGE+ Y ASFIEWFAE Sbjct: 66 PAWAAKTGKERAGIMRIWFDLIIANADDLAALMTAEQGKPLIESRGEVIYGASFIEWFAE 125 Query: 124 EGKRTYGDTIPSPSPTNRIVVIKEAIGVCAAITPWNFPAAMITRKAGPALAAGCPMVLKP 183 E KR GD + S R V IK+ IGVCA+ITPWNFP AMITRK PA+AAGC +V+KP Sbjct: 126 EAKRVSGDVMASTWSDKRTVTIKQPIGVCASITPWNFPIAMITRKVAPAIAAGCTIVIKP 185 Query: 184 AEATPFSALALAVLAERAGIPAGVFSVVTGTPKE---IGGEMTSNPIVRKISFTGSTGVG 240 AE TP SALA+A LA RAGIP GV +VVT + +G + S+PIVR +SFTGST VG Sbjct: 186 AEQTPLSALAIAELAHRAGIPPGVINVVTSDSDQSIAVGKVLCSSPIVRHVSFTGSTPVG 245 Query: 241 KLLMQQSASSIKKLSLELGGNAPFIVFDDADLDAAVEGAIASKYRNAGQTCVCANRIYVQ 300 ++LM+Q A ++KK+ LELGG+APFIVFDDADLDAAV GA+ SKYRNAGQTCVC NR YV Sbjct: 246 RILMEQCAPTVKKIGLELGGHAPFIVFDDADLDAAVVGALQSKYRNAGQTCVCTNRFYVH 305 Query: 301 DGVYDAFAAKLVEAVKKLKVGDGMENGVTQGPLINEQAVKKVEQHVADALAKGARVLLGG 360 + +YD F KL K+KVG+G+E GV QGPLI+ QAVKKVEQHV+DA++KGA+V+ GG Sbjct: 306 ESIYDTFVQKLGAGAAKIKVGNGVEQGVLQGPLIDAQAVKKVEQHVSDAVSKGAKVITGG 365 Query: 361 KRHALGHGFFEPTVLADVTPAMQVAREETFGPMAPLFRFKTDDEALSLANDTEFGLASYF 420 K+HALG F+EPTVL++++P M + EETFGP+A + +FKT+DEA++ ANDT+FGLASYF Sbjct: 366 KQHALGGYFYEPTVLSNISPDMLIMHEETFGPVAAVIKFKTEDEAVAAANDTDFGLASYF 425 Query: 421 YSRDIGRIWRVAEGLESGMVGINTGLISNEVAPFGGVKQSGLGREGSHYGIDDYLVVKYL 480 YSRDIGR+WRVAE LE GMVGINTGLISNEVAPFGGVKQSGLGREGS YGI++YL +KYL Sbjct: 426 YSRDIGRVWRVAEKLEYGMVGINTGLISNEVAPFGGVKQSGLGREGSKYGIEEYLEIKYL 485 Query: 481 CMGGI 485 CMGGI Sbjct: 486 CMGGI 490 >gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde dehydrogenase [Janthinobacterium sp. Marseille] Length = 505 Score = 184 bits (467), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 143/463 (30%), Positives = 230/463 (49%), Gaps = 17/463 (3%) Query: 14 QAYLNGAWCDADSGAKLEVHNPANGQLLGHVPLMGATETRRAIDAANAAWPAWKKKTAKE 73 + Y+NG + G + +V NPA G+ V L + + + A AA PAW + Sbjct: 8 KHYINGRLTETAGGRQQDVFNPATGEASAQVVLASDADVQAVVATAKAAAPAWADTAPLK 67 Query: 74 RSALLRRWYELMLANADDLALIMTAEQGKPLAEARGEIGYAASFIEW---FAEEGKRTYG 130 R+ +L ++ +L+ + DDLA +T E GK ++A+GE+ +E+ + K + Sbjct: 68 RARILFKFKDLIEKHHDDLAAAITREHGKVFSDAKGEVTRGLEVVEFACGVPQLLKTQFT 127 Query: 131 DTIPSPSPTNRIVVIKEAIGVCAAITPWNFPAAMITRKAGPALAAGCPMVLKPAEATPFS 190 D I + ++ +GV A ITP+NFP + A ALA G +LKP+E P Sbjct: 128 DNIGGGIDNWNL---RQPLGVTAGITPFNFPFMVPMWMAPVALATGNTFILKPSERDPSP 184 Query: 191 ALALAVLAERAGIPAGVFSVVTGTPKEIGGEMTSNPIVRKISFTGSTGVGKLLM-----Q 245 +L +A L ++AG+P GVF+V+ G + G + +P V+ +SF GST + + + + Sbjct: 185 SLMVAELLQQAGLPDGVFNVLQGDKLAVDG-LLQHPDVKAVSFVGSTPIAEYIYATGAAR 243 Query: 246 QSASSIKKLSLELGGNAPFIVFDDADLDAAVEGAIASKYRNAGQTCVCANRIYVQDGVYD 305 + S ++ G +V DA+L+ AV+ I + Y +AG+ C+ + + D Sbjct: 244 KGGSYPLRVQALGGAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAISVAVAVGDIAD 303 Query: 306 AFAAKLVEAVKKLKVGDGMENGVTQGPLINEQAVKKVEQHVADALAKGARVLLGGK-RHA 364 A L+ VK LKV +GME GP+++ K+E ++ + GA++L+ G+ Sbjct: 304 KLVAALIPRVKSLKVKNGMEADAEMGPVVSAAHKAKIEGYIDAGVKAGAKLLVDGRGLKV 363 Query: 365 LGH--GFFEPTVLAD-VTPAMQVAREETFGPMAPLFRFKTDDEALSLANDTEFGLASYFY 421 GH GFF L D VTP M + +EE FGP+ + R AL L N EFG + Sbjct: 364 AGHDKGFFLGGCLFDHVTPEMTIYQEEIFGPVLCVLRVPNFAAALELINRHEFGNGVSLF 423 Query: 422 SRDIGRIWRVAEGLESGMVGINTGL-ISNEVAPFGGVKQSGLG 463 + D + +E GMVGIN + + FGG K+S G Sbjct: 424 TSDGNTAREFSRRVEVGMVGINVPIPVPMAWHSFGGWKRSMFG 466 >gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase [Janthinobacterium sp. Marseille] Length = 1242 Score = 160 bits (404), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 132/456 (28%), Positives = 216/456 (47%), Gaps = 35/456 (7%) Query: 22 CDADSGAKLEVHNPAN-GQLLGHVPLMGATETRRAIDAANAAWPAWKKKTAKERSALLRR 80 C S A +EV NPAN ++G V A A+ A + W+ K ER+A+L + Sbjct: 592 CTQVSSACIEVRNPANHADVVGTVQQADAAVLELALQHATSGINTWQAKPIAERAAILLQ 651 Query: 81 WYELMLANADDLALIMTAEQGKPLAEARGEIGYAASFIEWFAEEGKRTYGDTIPSPSPTN 140 +L +A +L ++ E GK L A GE+ A F+ +++ + I S + Sbjct: 652 AADLFQQHATELIALLVREAGKTLPNAIGELREAIDFLRYYSAQA-------IASDA--- 701 Query: 141 RIVVIKEAIGVCAAITPWNFPAAMITRKAGPALAAGCPMVLKPAEATPFSALALAVLAER 200 + +G+ A I+PWNFP ++ T + ALAA ++ KPAE TP A L + Sbjct: 702 -----NQPLGLVACISPWNFPLSIFTGQVSAALAAANVVLAKPAEQTPLIACRAVQLLHQ 756 Query: 201 AGIPAGVFSVVTGTPKEIGGEMTSNPIVRKISFTGSTGVG----KLLMQQSASSIKKLSL 256 AG+P + G+ + IG ++ ++P V + FTGST V + L+Q+S S K + L Sbjct: 757 AGVPENALLFLPGSGETIGAQLVTDPRVSAVVFTGSTQVAQSIQRKLVQRSISEGKDIPL 816 Query: 257 --ELGGNAPFIVFDDADLDAAVEGAIASKYRNAGQTCVCANRIYVQDGVYDAFAAKLVEA 314 E GG IV A + V I+S + +AGQ C + +QD + + L A Sbjct: 817 IAETGGQNTMIVDSSALCEQVVRDVISSAFDSAGQRCSALRVLCLQDDIAEQTLQMLHGA 876 Query: 315 VKKLKVGDGMENGVTQGPLINEQAVKKVEQHVADALAKGARVLLGGKRHA---LGHGFFE 371 +++L++G GP+I+ +A ++ ++ A A G +V R + +G F Sbjct: 877 MQELRIGRPDHLATDVGPVIDAEAQAHLQAYIRQAQAAGKQV-----RQLPLPVTNGSFV 931 Query: 372 PTVLADVTPAMQVAREETFGPMAPLFRFKTDD--EALSLANDTEFGLASYFYSRDIGRIW 429 + ++ ++ R E FGP+ + R++ DD + L N T FGL ++R I Sbjct: 932 APCIIEIADINELQR-EVFGPVLHVLRYRRDDLPQLLMDINSTGFGLTLGIHTRIDETID 990 Query: 430 RVAEGLESGMVGINTGLISNEVA--PFGGVKQSGLG 463 V + G + +N ++ V PFGG SG G Sbjct: 991 YVVRHAQVGNIYVNRNIVGAVVGVQPFGGEGLSGTG 1026 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,115,297 Number of extensions: 46982 Number of successful extensions: 178 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 167 Number of HSP's successfully gapped: 3 Length of query: 485 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 398 Effective length of database: 899,382 Effective search space: 357954036 Effective search space used: 357954036 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)