BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0870.p
         (339 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981239|ref|YP_001352533.1| acetoin utilization protein [Ja...   107   1e-24
gi|152981105|ref|YP_001354549.1| histone deacetylase superfamily...   100   1e-22

>gi|152981239|ref|YP_001352533.1| acetoin utilization protein
           [Janthinobacterium sp. Marseille]
          Length = 434

 Score =  107 bits (267), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 10/196 (5%)

Query: 132 CAIAGAQALLDGQPRAYALCRPPGHHARRDAAG--GFCYLNNAAIAAQMLSQRH--SRVL 187
           C  A  + +      A+AL RP GHH+ R   G  GFC LN  AI  + +  ++   ++ 
Sbjct: 84  CITAADKVMTKEVDNAFALVRPCGHHSYRVVHGSRGFCTLNMEAIMVEYIRHKYGVKKIA 143

Query: 188 VLDTDMHHGQGIQEIFYTRRDVMYVSIHGDPENFYPVVAGFEDERGSGEGHGYNLNLPMP 247
           ++DTD HHG G Q+IF+   + +++S+H D    YP  +GF DE G     G  +NLPMP
Sbjct: 144 IVDTDCHHGDGSQDIFWHDPNTLFISMHQDGRTLYP-GSGFADELGGPNAFGTTINLPMP 202

Query: 248 HGAPEAVFFERLTQACRAI-TLYQPEVLVLSLGFDIFEDDPQSVVGVSTAGFERLGREVA 306
               E  F   L +    I   ++P++++ S G D    DP + +  +  G+  L + + 
Sbjct: 203 PDTCEEGFLYVLDEIVMPILDEFKPDLIINSAGQDNHYSDPITNMKFTAHGYAVLNQRLK 262

Query: 307 ALGLPTLVVQEGGYHI 322
               P L V EGGY I
Sbjct: 263 ----PDLAVLEGGYSI 274


>gi|152981105|ref|YP_001354549.1| histone deacetylase superfamily
           protein [Janthinobacterium sp. Marseille]
          Length = 322

 Score =  100 bits (250), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 112/228 (49%), Gaps = 15/228 (6%)

Query: 111 LADGSCPVGPQTWHSAYWSAQCAIAGAQALLDGQP-RAYALCRPPGHHARRDAAGGFCYL 169
           L  G   + P +  +       A AG   +LD +    +   RP GHHA    A GFC  
Sbjct: 91  LDGGDTVMSPGSLEAVMRCVGAACAGVDLVLDNEAHNVFCATRPCGHHAEPSRAMGFCIY 150

Query: 170 NNAAIAAQMLSQRHS--RVLVLDTDMHHGQGIQEIFYTRRDVMYVSIHGDPENFYPVVAG 227
           N AAIAA    + H   RV V+D D+HHG G Q  FY R ++ Y S H    +FYP   G
Sbjct: 151 NQAAIAAAYAYEVHKLERVAVIDFDVHHGNGTQAAFYDRPELFYASSH--QSHFYP---G 205

Query: 228 FEDERGSGEGHGYNLNLPMPHGAPEAVFFERL-TQACRAITLYQPEVLVLSLGFDIFEDD 286
              E+ +G  H   +N+P+P G   A+F E+   +   AI  + PE++++S GFD    D
Sbjct: 206 TGLEKETGVSHNI-VNVPLPRGCDSALFREQTAAKMLPAIRAFNPELIIISAGFDAHHLD 264

Query: 287 PQSVVGVSTAGFERLGREVAALGLPT-----LVVQEGGYHIAGLQANA 329
           P + + +    ++ + RE+  +   T     + + EGGY + GL ++ 
Sbjct: 265 PLAGLNLQDDDYDWVTRELMKIADETCEGRIVSILEGGYSLEGLASST 312


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 901,585
Number of extensions: 40430
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 339
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 255
Effective length of database: 910,473
Effective search space: 232170615
Effective search space used: 232170615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)