BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0869.p (305 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981488|ref|YP_001352078.1| LysR family transcriptional reg... 91 1e-19 gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 88 6e-19 gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 74 9e-15 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 64 1e-11 gi|152982346|ref|YP_001355337.1| LysR family transcriptional reg... 62 3e-11 >gi|152981488|ref|YP_001352078.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 326 Score = 90.5 bits (223), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/297 (26%), Positives = 131/297 (44%), Gaps = 33/297 (11%) Query: 6 LRTFMFVVQERGVGRAASTLCLSQPAVSQALRRLEEAVGGILLHRRHGEFRLTPLGEEIY 65 L+ F V + RAA L L+QPAVS +++LEE G L + + LTP G E+ Sbjct: 9 LKVFETVARHLSFSRAAEELHLTQPAVSTQVKKLEEHAGLALFEQLGKKIYLTPGGSELL 68 Query: 66 AVAREMYGMVARIDGAAGHAGEDVAGHLRLLLMSRVQSAAYDDFLAR----FHRRYPRVE 121 +R + + A G L + ++S A D F R F R + V Sbjct: 69 HYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVIS-----AGDYFFPRLLVEFARSHQGVT 123 Query: 122 FRIEVMQSAAILDTLAKGSSGLGLCLCRKPVE-KLERRLFLRHRYVLVCGRHHPLFAQRS 180 + V +L+ + + + + + R P + F H YV+V HPL +Q++ Sbjct: 124 LNLSVHNREGLLNQMTSNLTDIAI-MVRPPTDMDTINEAFAPHPYVIVAAPDHPLVSQKN 182 Query: 181 VSMAELLEQNFVC---------FASDQLGDTLSPLTVFRDQQGFTGHIAGTSPHVEEIRR 231 + M+ L+++ FV D GD ++ + V + + E I++ Sbjct: 183 IPMSRLMQEPFVVREKGSDTWHSMEDGFGDRINDINVAMEIRS-----------TETIKQ 231 Query: 232 MVVAGVGLSFLPEHLIGQDVTDGLLKVLPL-GAPVAEIDVFLTWHGQRKLSAPEQAF 287 V+AG+G+SFL H I ++ G L VL + G PV ++ ++ ++L QAF Sbjct: 232 AVIAGMGVSFLSAHTISLELQAGSLAVLDVEGFPVM-LNWYIVHRKNKRLPPVAQAF 287 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 88.2 bits (217), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 70/282 (24%), Positives = 123/282 (43%), Gaps = 11/282 (3%) Query: 1 MDWNLLRTFMFVVQERGVGRAASTLCLSQPAVSQALRRLEEAVGGILLHRRHGEFRLTPL 60 M L+ + V +E+ G AA ++QP +S A+++LE+ +G L R E +TPL Sbjct: 17 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 76 Query: 61 GEEIYAVAREMYGMVARIDGAAGHAGEDVAGHLRLLLMSRVQSAAYDDFLARFHRRYPRV 120 G +I A A + A I A + + G RL ++ + + R P++ Sbjct: 77 GAQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKTIIERVPQM 136 Query: 121 EFRIEVMQSAAILDTLAKGSSGLGLCLCRKPVEKLERRLFLRHRYVLVCGRHHPLFAQRS 180 ++ + +L+ L +G + P + L + +V+ +HH + S Sbjct: 137 PLVLQENFTVKLLELLRQGELDAAIVALPFPDQGLLVQPVYDEPFVVAVPKHHKWANRDS 196 Query: 181 VSMAELLEQNFV------CFASDQLGDTLSPLTVFRDQ-QGFTGHIAGTSPHVEEIRRMV 233 VS +L + + CF DQ+ + ++ F G G+S +E IR MV Sbjct: 197 VSTDDLKSETMLLLGNGHCF-RDQVLEVCPEMSRFSTSGDGIARTFEGSS--LETIRHMV 253 Query: 234 VAGVGLSFLPEHLI-GQDVTDGLLKVLPLGAPVAEIDVFLTW 274 +G+G++ LP+ I DG+L+ +P P V L W Sbjct: 254 ASGIGITVLPQASIPDMQAKDGMLRYIPFTQPGPSRRVVLVW 295 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 74.3 bits (181), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 10/248 (4%) Query: 6 LRTFMFVVQERGVGRAASTLCLSQPAVSQALRRLEEAVGGILLHRRHGEFRLTPLGEEIY 65 LR F+ V +E GRAA L ++QP +SQ+++ LE +G L R LTP G + Sbjct: 8 LRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTPAGIALL 67 Query: 66 AVAREMYGMVARIDGAAGHAGEDVAGHLRLLLMSRVQSAAYDDFLARFHRRYPRVEFRIE 125 A+ + A + A +G L L +S + FL F YP+VE + Sbjct: 68 PEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQVEIDLR 127 Query: 126 VMQSAAILDTLAKGSSGLGLCLCRKPVE---KLERRLFLRHRYVLVCGRH-HPLFAQRSV 181 + LD LA+G +GL + P + +L+ L +L + + +++V Sbjct: 128 EATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAVPKGLKAVRGKQTV 187 Query: 182 SMAELLEQNFVCFA---SDQLGDTLSPLTVFRDQQGFTGHIAGTSPHVEEIRRMVVAGVG 238 ++ + E + F + D + L +RD G T HI + ++ I +V AG+G Sbjct: 188 ALQAVAELPLIIFPRRIAPAFHDAI--LACYRD-AGLTPHIGQEAIQMQTIIGLVSAGMG 244 Query: 239 LSFLPEHL 246 ++ +P+ + Sbjct: 245 IALVPQSV 252 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 63.9 bits (154), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 16/205 (7%) Query: 1 MDWNLLRTFMFVVQERGVGRAASTLCLSQPAVSQALRRLEEAVGGILLHRRHGEFRLTPL 60 M+ LR F+ Q + RA+ +L ++QP +S ++++E+ +G L R +LT Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 61 GEEIYAVAREMYGMVARIDGAAGHAGEDVAGHLRLLLMSRVQSAAYDDF--------LAR 112 GE A+ + +D AG D L L RV F LA Sbjct: 61 GELFQVYAKRA---LLEVD-----AGLDALNELENLKHGRVTFGVLSSFGTFHLPPILAD 112 Query: 113 FHRRYPRVEFRIEVMQSAAILDTLAKGSSGLGLCLCRKPVEKLERRLFLRHRYVLVCGRH 172 F++ YP ++ + ++S I + L G G+ E++ LV G H Sbjct: 113 FNKVYPGIKITVLRLRSGEIEERLLDGDLHFGVAYAPSSTEQINVEPLFTVPLALVVGDH 172 Query: 173 HPLFAQRSVSMAELLEQNFVCFASD 197 HPL +++ EL E V + + Sbjct: 173 HPLVGSAGITLNELNEHELVMLSDE 197 >gi|152982346|ref|YP_001355337.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 319 Score = 62.4 bits (150), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 78/312 (25%), Positives = 129/312 (41%), Gaps = 41/312 (13%) Query: 1 MDWNLLRTFMFVVQERGVGRAASTLCLSQPAVSQALRRLEEAVGGILLHRRHGEFRLTPL 60 +D NLLR F V+ E+ + RAA+ L ++QPAVS ALRRL + +G L+ R + T Sbjct: 6 LDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLGDELVIRTAHGVKPTSR 65 Query: 61 GEEIYAVAREMYGMVARIDGAAGHAGEDV--AGHLRLLLMSRVQSAAYDDFLAR-FHRRY 117 EE++ V R ++ ++ A DV A + M+ +A + FL R + Sbjct: 66 AEELWPVVRR---ALSDLEAAVTPDTFDVSRANTTFRMAMADATAALWLPFLVRAIEKDA 122 Query: 118 PRVEFRIEVMQSAAILDTLAKGSSGLGLCLC-----------RKPVEKLERRLFLRHRYV 166 P + R+ + + L +G L + V ++ YV Sbjct: 123 PGLNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTGEYV 182 Query: 167 LVCGRHHPL----FAQRSVSMAELLEQNFVCFASDQLGDTLSPL-----TVFRDQQGFT- 216 V ++HPL + A L +F A + + L+ L + Q FT Sbjct: 183 CVMRKNHPLAKVELTLDNYCAAHHLLVSFSGRAKGLMDEALTNLGRERRILLTVNQFFTA 242 Query: 217 GHIAGTSPHVEEIRRMVVAGVGLSFLPEHLIGQDVTDGLLKVLPLGAPVAEIDVFLTWHG 276 G + +S + + R ++A G++ E LI +D LP P +D+ WH Sbjct: 243 GRVVASSDLITVLPRHLIASTGMA---EALIAKD--------LPFELPDVHVDML--WH- 288 Query: 277 QRKLSAPEQAFL 288 +R P +L Sbjct: 289 ERDARNPAHKWL 300 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.140 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 710,295 Number of extensions: 30016 Number of successful extensions: 162 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 9 Length of query: 305 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 222 Effective length of database: 914,170 Effective search space: 202945740 Effective search space used: 202945740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)