BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0867.p (339 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981041|ref|YP_001353716.1| Fe2+-dicitrate sensor, membrane... 186 2e-48 gi|152980924|ref|YP_001352445.1| Fe2+-dicitrate sensor, membrane... 156 1e-39 gi|152980828|ref|YP_001354041.1| Fe2+-dicitrate sensor, membrane... 145 3e-36 gi|152981320|ref|YP_001353719.1| Fe2+-dicitrate sensor, membrane... 144 6e-36 gi|152981212|ref|YP_001354277.1| Fe2+-dicitrate sensor, membrane... 137 7e-34 >gi|152981041|ref|YP_001353716.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 340 Score = 186 bits (471), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 110/325 (33%), Positives = 181/325 (55%), Gaps = 14/325 (4%) Query: 9 SEEITIEAAQWIVRLSAGNAAQQRQAAEEFARWKSESRQHAQAAHELHGVLEQINSLLDT 68 + ++ AA+W +L +G++ A EF RW+ + HA+A + +E++ + DT Sbjct: 26 TADVIARAAEWYAQLHSGDSGAAELA--EFERWRQQDPGHAEA----YARMEKLWARFDT 79 Query: 69 SNGDPVPLCAGLKTAMTQPRLPDRMRRAVATLALICGIGLPLWLTYQAYPADYLLADMRT 128 + P L L A+ + ++ A + L+C W Q+ Y+LAD RT Sbjct: 80 VSSKPAVL--ALNKALKSG--AGKRKKLTAQVLLLCIAVFAAWFASQSMFGKYMLADYRT 135 Query: 129 ATGAWAAQTLEDGSRITLGTRSAVNFRFDARHRTVELVKGEILVEVARDRARPFLIQTTD 188 A G L D SRITL T+SA++ F R R V L +GEI+++VA+D RPF+++T Sbjct: 136 AIGEQRVIELSDQSRITLNTQSAIDIDFSGRQRRVTLQRGEIMIDVAKDSTRPFIVETAH 195 Query: 189 GSIEALGTRFLVRRDDSGTVVSMLESKVSIHAAGQQAQTPVILAAGQRIRLHGDTVGVPE 248 G+ ALGT+++V+R+ T V++LES S+ A + + V L G++ + D V Sbjct: 196 GTARALGTQYIVKREADATRVTVLES--SVQACAAKVEACVTLTPGEQTTITPDAVQPVS 253 Query: 249 PIDAAALERAWRSHQLVSRQRPLTELLDELNRYRPGRILYDQAQLKGLEMTVVLPLDDTQ 308 ++A A AW H LV +PL ++L EL RYR GRI+++ ++ GL ++ V LDDT Sbjct: 254 VVNAQAAA-AWSKHMLVVDDQPLAQVLTELARYRYGRIVFNADEIAGLRVSGVYALDDTD 312 Query: 309 RALQLLVDCIPGLRVRQFTPYLTYI 333 R L++L+ P +R++++TP L + Sbjct: 313 RTLEVLLATTP-IRIKRYTPLLIVV 336 >gi|152980924|ref|YP_001352445.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 334 Score = 156 bits (395), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 107/326 (32%), Positives = 176/326 (53%), Gaps = 17/326 (5%) Query: 11 EITIEAAQWIVRLSAGNAAQQRQAAEEFARWKSESRQHAQAAHELHGVLEQINSLLDTSN 70 ++ +A +W+V L +G+A +AA + +W++ +H +A + V +Q+ ++ + Sbjct: 12 QVIDKAVEWLVHLWSGSADLDSRAA--WQKWRAADPEHERAWLHIEDVNQQLRGRMNGVS 69 Query: 71 GDPVPLCAGLKTAMTQPRLPDRMRRAVATLALICGIGLPLWLTYQAYPADYLLADMRTAT 130 D ++ QP R R+A+ T +++ +G WL+ + L +++RTAT Sbjct: 70 ADTA------IASIAQPASRSR-RKALKTFSVVVTVGTAAWLSSETMLWKTLTSEIRTAT 122 Query: 131 GAWAAQTLEDGSRITLGTRSAVNFRFDARHRTVELVKGEILVEVARDR---ARPFLIQTT 187 G L DG+++ L T +AVN R+D+ R V+LV+GE+L+ A+D ARPF+ +T Sbjct: 123 GERLNFKLADGTQLELNTDTAVNVRYDSALRLVQLVRGELLITTAKDSVSPARPFMAETV 182 Query: 188 DGSIEALGTRFLVRRDDSGTVVSMLESKVSIHAAGQQAQTPVILAAGQRIRLHGDTVGVP 247 G I ALGT+F VR+D + V++LE V + A Q V L AGQ + + G Sbjct: 183 AGRILALGTKFTVRQDGDISQVAVLEGAVELIPANNPGQV-VRLDAGQAGSFNAE--GAL 239 Query: 248 EPIDAAALERAWRSHQLVSRQRPLTELLDELNRYRPGRILYDQAQLKGLEMTVVLPLDDT 307 P A + + AW L++ L + + EL RYRPG + D A GL ++ V PL+D Sbjct: 240 TPPQAISAQAAWTEGVLIASDMRLDDFIAELKRYRPGHLSCDPAS-AGLRLSGVFPLNDM 298 Query: 308 QRALQLLVDCIPGLRVRQFTPYLTYI 333 Q+ L L + +P +RV+ FT Y T I Sbjct: 299 QKILTSLTEVLP-VRVQTFTRYWTRI 323 >gi|152980828|ref|YP_001354041.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 327 Score = 145 bits (366), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 106/321 (33%), Positives = 164/321 (51%), Gaps = 31/321 (9%) Query: 5 ACAPSEEITIEAAQWIVRLSAGNAAQQRQAAEE--FARWKSESRQHAQAAHELHGVLEQI 62 A + I ++AA W+V+L + Q+ A++ RW +S +H +A H + + Sbjct: 13 ASGIDKRIVMDAANWLVKLHS----QEMDASDHASLKRWCEQSTEHQRAWHAANELARNF 68 Query: 63 NSLLDTSNGDPVPLCAGLKTAMTQPRLPDRMRRA-VATLALICGIGLPLWLTYQAYPADY 121 + VP GL T Q R RRA + TLA++C + WL + D Sbjct: 69 GA---------VPAGLGLTTLGRQ-----RNRRAAMKTLAIVCTLAPTSWLAWTHMARD- 113 Query: 122 LLADMRTATGAWAAQTLEDGSRITLGTRSAVNFRFDARHRTVELVKGEILVEVARDRA-- 179 + +TATG + TL DGS + L T S+V+ FD + R + L GE+LV+ A+D A Sbjct: 114 ---NYQTATGERSTYTLADGSSLMLNTGSSVDIVFDDKQRLLRLRAGEVLVQTAKDSAPN 170 Query: 180 -RPFLIQTTDGSIEALGTRFLVRRDDSGTVVSMLESKVSIHAAGQQAQTPVILAAGQRIR 238 RPF++QT GS+ ALGTRF+VR+ + T V++LE V + A G PVI+AAG Sbjct: 171 PRPFIVQTGQGSVRALGTRFIVRQREDATEVAVLEHAVEVRALG--VADPVIIAAGYGGS 228 Query: 239 LHGDTVGVPEPIDAAALERAWRSHQLVSRQRPLTELLDELNRYRPGRILYDQAQLKGLEM 298 + P+ AW L++ ++ L + L EL RYRPG + D A + L + Sbjct: 229 FGKTDIAALTPLANNVNASAWTQGILIADRQRLEDFLAELGRYRPGILRCDPA-VADLRI 287 Query: 299 TVVLPLDDTQRALQLLVDCIP 319 + V +T++AL +L + +P Sbjct: 288 SGVFQTSNTEQALNVLQETLP 308 >gi|152981320|ref|YP_001353719.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 329 Score = 144 bits (364), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 118/340 (34%), Positives = 174/340 (51%), Gaps = 24/340 (7%) Query: 1 MTEKACAP--SEEITIEAAQWIVRLSAGNAAQQRQAAEEFARWKSESRQHAQAAHELHGV 58 T A AP ++ I A WI+ L +G+A + E F +W+ + +H A L V Sbjct: 4 FTPVASAPAVTDPIVEAAIDWIICLRSGDAGPVQY--EAFKQWRLQDVRHDTAIRHLEQV 61 Query: 59 LEQINSLLDTSNGDPVPLCAGLKTAMTQPRLPDRMRRAVATLALI---CGIGLPLWLTYQ 115 L +SL +S+ A LK+ PDR + TLAL+ G GL L + Sbjct: 62 LGTFDSLPASSHVRSSARRALLKS-------PDRRKLLRNTLALLLVGSGTGL---LAQR 111 Query: 116 AYPADYLLADMRTATGAWAAQTLEDGSRITLGTRSAVNFRFDARHRTVELVKGEILVEVA 175 P + + AD+RT+TG L DGS+I L RSA + FD R + L GEI+V+VA Sbjct: 112 ITPLNTVTADLRTSTGQRKHMHLADGSQIWLNARSAADIDFDESTRRIHLRSGEIVVDVA 171 Query: 176 RDRARPFLIQTTDGSIEALGTRFLVRRDDSGTVVSMLESKVSIHAAGQQAQTPVILAAGQ 235 D RPF++++ +GS+ ALGTRFLVR+++ TV+++L S V I A ++T L AG+ Sbjct: 172 ADAQRPFIVESAEGSMRALGTRFLVRQEEGATVLAVLHSSVRIDAKDGASRT---LVAGE 228 Query: 236 RIRLHGDTVGVPEPIDAAALERAWRSHQLVSRQRPLTELLDELNRYRPGRILYDQAQLKG 295 R + V + AA AW + RPL+E++ + YR G L Q Sbjct: 229 TARFDQSQITVIDTASGAAA--AWVDGFIEVHDRPLSEVIAAMRPYRSG-FLRVTPQAGA 285 Query: 296 LEMTVVLPLDDTQRALQLLVDCIPGLRVRQFTPYLTYIDL 335 L +T PLDD++R L L + +P + +R T Y I+L Sbjct: 286 LRVTGTFPLDDSKRTLAALAETLP-IVIRSRTDYWISIEL 324 >gi|152981212|ref|YP_001354277.1| Fe2+-dicitrate sensor, membrane component [Janthinobacterium sp. Marseille] Length = 341 Score = 137 bits (346), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 109/347 (31%), Positives = 166/347 (47%), Gaps = 34/347 (9%) Query: 3 EKACAPSEEITIEAAQWIVRLSAGNAAQQRQAAEEFARWKSESRQHAQAAHELHGVLEQI 62 + A A +E+ AA+W+V L A + +++ RW+ H +A ++ E++ Sbjct: 16 QSAAAIPQEVRKRAAEWLVELQADTVTDDTR--KQWQRWRDAHPDHLRAWQKIEAFGEKL 73 Query: 63 NSLLDTSNGDPVPLCAGLKTAMTQPRLPDRMRRAVATLALICGIGLPLWLTYQAYPADYL 122 +L PL A+T P R R+A+ TLA++ G WL + P Sbjct: 74 QTL-------SSPLA---HAALTTPGSAGR-RQAIKTLAIMLFAGGTTWLVEEQLPWRQW 122 Query: 123 LADMRTATGAWAAQTLEDGSRITLGTRSAVNFRFDARHRTVELVKGEILVEVARD----- 177 AD RT G A TL DG+ + L ++V+ + R V L+ G+I++ A D Sbjct: 123 SADRRTGVGERATITLADGTLLELNAETSVDIHYSDTQRIVRLLSGDIMITTAHDPRQAS 182 Query: 178 --RARPFLIQTTDGSIEALGTRFLVRRDD----SGTVVSMLESKVSI--HAAGQQAQTPV 229 +ARPFL++T GSI ALGT+F V++ + + VS+ E V I + G+ Sbjct: 183 GGKARPFLVETRQGSIRALGTQFSVQQRNEQRGGASKVSVFEGAVEIRPNLKGEAR---- 238 Query: 230 ILAAGQRIRLHGDTVGVPEPIDAAALERAWRSHQLVSRQRPLTELLDELNRYRPGRILYD 289 IL AGQ+ D E +D A AWR +V++ PL + L EL YRPG I D Sbjct: 239 ILQAGQQTSFTADGFSAIEAVDEAVT--AWRQGMIVAQDLPLRDFLKELGNYRPGHIDCD 296 Query: 290 QAQLKGLEMTVVLPLDDTQRALQLLVDCIPGLRVRQFTPYLTYIDLV 336 ++ L +T PL DT + L +L +P L+VR T Y + V Sbjct: 297 D-KIAQLPVTGTYPLKDTDKVLDMLQTTLP-LQVRFVTRYWVTLHAV 341 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 748,944 Number of extensions: 29054 Number of successful extensions: 140 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 105 Number of HSP's successfully gapped: 16 Length of query: 339 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 255 Effective length of database: 910,473 Effective search space: 232170615 Effective search space used: 232170615 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)