BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0865.p
         (244 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981489|ref|YP_001355336.1| GMP synthase (glutamine-hydroly...   103   7e-24

>gi|152981489|ref|YP_001355336.1| GMP synthase
           (glutamine-hydrolyzing) [Janthinobacterium sp.
           Marseille]
          Length = 255

 Score =  103 bits (258), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/194 (36%), Positives = 97/194 (50%), Gaps = 10/194 (5%)

Query: 4   IAIFQHEATQGPGVLLEHLQQHALPY---RLYHSAAQDDVPRDASQFAGIVILGSDHSVN 60
           + + QH   +G G + E LQQ  +     RL+ SA+    P D      I+ LG   SVN
Sbjct: 28  VHVLQHVPFEGLGSIEEWLQQRNMSISYTRLFESASFP--PLDGIDL--IIALGGPMSVN 83

Query: 61  DA--LPWIAAEKSLLEDALARDVPVLGHCFGAQLLARAMGAKVTRNICPNIGWGQVWITP 118
           D   LPW+ AEK  + DA+A    VLG C G+QL+A A+GAKV       IGW  +   P
Sbjct: 84  DEEELPWLRAEKFFIADAIASHKAVLGICLGSQLIANALGAKVYPAAEKEIGWFPIVAEP 143

Query: 119 PAQQRMRLPRLAWLFNWHYDTFEIPTGAVRTMYGSHCLNKGFLRG-RQWGFQGHMEVTEE 177
                +  P    +F+WH +TF++P GA+     + C N+ F  G R  G Q H+E T E
Sbjct: 144 AMLDALAFPASVDVFHWHGETFDLPEGAIHLASSAACRNQAFQVGTRVIGLQFHLETTPE 203

Query: 178 SIRRWCASGREELL 191
           S         EEL+
Sbjct: 204 SADAIIQHCGEELV 217


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.136    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 612,164
Number of extensions: 25574
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 163
Effective length of database: 921,564
Effective search space: 150214932
Effective search space used: 150214932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)