BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0861.p (241 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 122 2e-29 gi|152981549|ref|YP_001352605.1| glucose-1-dehydrogenase, (3-oxo... 103 1e-23 gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Jant... 100 1e-22 gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxo... 94 8e-21 gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Jant... 92 2e-20 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 122 bits (306), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 134/244 (54%), Gaps = 9/244 (3%) Query: 1 MQFGGTSVIITGAGKGIGRACARLMAQRGAEVIALSRTASDLESLREEIG--GRSVQVDL 58 + G ++TGA +GIGRA A+ +A+ GA+VI + + S ++ E +G G+ V +D+ Sbjct: 4 VDLSGQVALVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYLGNGGKGVVLDV 63 Query: 59 ADPAAA----RRAMAEAGSADYLINSAGINVLQSTLAMSDDAYEAVLGVNLRAALITCQA 114 D A + E G+ L+N+AGI Q + M D+ +++V+ NL A +A Sbjct: 64 NDAARSVALIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLSRA 123 Query: 115 FAQARIAAGGGGAIVNITSIAGHRGFAEHLCYAASKAGLEGATRVLARELGPHGIRVNAV 174 + + A G I+NITS+ G G A + YAA+KAG+ G +R LARE+G I VN + Sbjct: 124 VLRGMMKAKTG-RIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNCI 182 Query: 175 APTITLTELAEAAWSDPAKSAPMMVRHPLQRFASAEDVARSIAMLLSEDAAMMTGAVVPV 234 AP T++ + + A ++ + PL R ED+A +++ L S A+ +TG + V Sbjct: 183 APGFIDTDMTKTL--SEQQIAALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTLHV 240 Query: 235 DGGF 238 +GG Sbjct: 241 NGGM 244 >gi|152981549|ref|YP_001352605.1| glucose-1-dehydrogenase, (3-oxoacyl-(acyl carrier protein) reductase) [Janthinobacterium sp. Marseille] Length = 254 Score = 103 bits (256), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 121/250 (48%), Gaps = 12/250 (4%) Query: 2 QFGGTSVIITGAGKGIGRACARLMAQRGAEVIALSRTASDLESLREEIGGRSVQV--DLA 59 F I+TG GIG+ A+ + GA V+ R + L + EIGG+ + V D+A Sbjct: 3 SFSSKVAIVTGGSSGIGKEVAKRLVAAGASVVIGGRDEAKLANAAREIGGKVLYVAGDIA 62 Query: 60 DPAAARRAMAEA----GSADYLINSAGINVLQSTLAMSDDAYEAVLGVNLRAALITCQAF 115 P+ A+ +A A G D LIN+AG+ ++ L + + Y L L+ QA Sbjct: 63 LPSTAKALVAAATDAFGGVDILINNAGVFKPKAFLEVDEQEYSWFLDTILKGKFFMAQA- 121 Query: 116 AQARIAAGGGGAIVNITSIAGHR--GFAEHLCYAASKAGLEGATRVLARELGPHGIRVNA 173 A + GGGAIV S+ + G Y+A+ AG+ TR LA EL P IR+N Sbjct: 122 AAKAMQLRGGGAIVQTGSLWAIQAIGATPSAAYSAANAGVHALTRNLAIELAPFNIRINT 181 Query: 174 VAPTITLTELAEAAWSDP--AKSAP-MMVRHPLQRFASAEDVARSIAMLLSEDAAMMTGA 230 VAP + T + +D + P HPL R DVA ++ L S A+ +TG Sbjct: 182 VAPAVVETPVYNTFMTDDQVKDTLPSFNAFHPLGRNGQPADVAEAMLFLASSSASWITGT 241 Query: 231 VVPVDGGFLA 240 V+PVDGG A Sbjct: 242 VLPVDGGVTA 251 >gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 246 Score = 99.8 bits (247), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 119/240 (49%), Gaps = 14/240 (5%) Query: 9 IITGAGKGIGRACARLMAQRG-AEVIALSRTASDLESLREEIGGR-----SVQVDLADPA 62 IITGA +GIG A A +AQ G A VI + +A++ ++L ++ +V+ D+A+ A Sbjct: 10 IITGASRGIGAAIAERLAQDGFAVVINYASSATEADALVAKLQAAQHEAIAVKADVANSA 69 Query: 63 AARRAMAEA----GSADYLINSAGINVLQSTLAMSDDAYEAVLGVNLRAALITCQAFAQA 118 RR E G D LIN+AGI + S SD+ +E +N+R T + +A Sbjct: 70 DVRRLFDETEQKLGKVDVLINNAGILQMASLAETSDELFERTFSINVRGTFNTLR---EA 126 Query: 119 RIAAGGGGAIVNITSIAGHRGFAEHLCYAASKAGLEGATRVLARELGPHGIRVNAVAPTI 178 GG +VN +S + Y SKA +E T + A+E+ I VNAVAP Sbjct: 127 ATRLNDGGRVVNFSSTTVAMSLPNYSVYTGSKAAVEVLTPIFAKEMRGRNITVNAVAPGP 186 Query: 179 TLTELAEAAWSDPAKSAPMMVRHPLQRFASAEDVARSIAMLLSEDAAMMTGAVVPVDGGF 238 T+L ++ A+ + PLQR +D+A +++ L+ D + G V+ +GG Sbjct: 187 VATDLFFNGKTE-AQIQQLANMPPLQRLGQPDDIAAAVSFLVGRDGGWINGQVLRANGGL 245 >gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxoacyl-(acyl carrier protein) reductase) [Janthinobacterium sp. Marseille] Length = 258 Score = 94.0 bits (232), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 85/252 (33%), Positives = 120/252 (47%), Gaps = 15/252 (5%) Query: 3 FGGTSVIITGAGKGIGRACARLMAQRGAEVIALSRTASDLESLREEI--GGRSVQV---D 57 F I+TG G GIG+ A + + GA V+ R A+ L+ + EI G V+ D Sbjct: 4 FSSKVAIVTGGGSGIGKEVAARLVKAGANVVIGGRDAAKLQRVATEIDPSGDHVRFHAGD 63 Query: 58 LADPAAAR----RAMAEAGSADYLINSAGINVLQSTLAMSDDAYEAVLGVNLRAALITCQ 113 +A PA A A G D LIN+AG+ ++ L + + Y+ L L+ Q Sbjct: 64 IAQPATATALVDLAKQAFGGVDILINNAGVFRPKAFLEVEEAEYDWFLDTILKGKFFMAQ 123 Query: 114 AFAQARIAAGGGGAIVNITSIAGHR--GFAEHLCYAASKAGLEGATRVLARELGPHGIRV 171 A A + GGGAIV S+ + G Y+A+ AG+ TR LA EL IR+ Sbjct: 124 A-AAKAMKLRGGGAIVQTGSLWALQAIGATPSAAYSAANAGVHALTRNLAIELAASNIRI 182 Query: 172 NAVAPTITLTELAEAAWSDPAKSAPM---MVRHPLQRFASAEDVARSIAMLLSEDAAMMT 228 N VAP + T + +D A + HPL R DVA +I L S +A+ +T Sbjct: 183 NTVAPGVVETPVYNTFMTDDQVKATLPAFNAFHPLGRNGQPADVAEAILFLASANASWIT 242 Query: 229 GAVVPVDGGFLA 240 G V+ VDGG +A Sbjct: 243 GTVLSVDGGVMA 254 >gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 272 Score = 92.4 bits (228), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 14/197 (7%) Query: 1 MQFGGTSVIITGAGKGIGRACARLMAQRGAEVIALSRTASDLESLREEI---GG--RSVQ 55 + F G ++TGA G+G A+++A GA+VI SR L+ LR EI GG + V Sbjct: 19 VNFEGKVALVTGASSGLGARFAKVLAMAGAQVILASRRVDRLKELRAEIEAEGGAAQVVS 78 Query: 56 VDLADPAAARRAMA----EAGSADYLINSAGINVLQSTLAMSDDAYEAVLGVNLRAALIT 111 +D+ D A+ + A+A E G+ D L+N++G++ Q + ++ + Y ++ N R A Sbjct: 79 LDVTDYASIKSAIAHAETETGAIDILVNNSGVSASQRLVDVTPEDYAHMMDTNQRGAFFV 138 Query: 112 CQAFAQARIAAGGGGA-----IVNITSIAGHRGFAEHLCYAASKAGLEGATRVLARELGP 166 Q A+ IA G I+NI S+AG R E Y SKA + T+ +A E G Sbjct: 139 AQEVAKRMIARHKGDPKKQHRIINIGSVAGLRVVPELGLYCMSKAAVVHMTKAMAVEWGK 198 Query: 167 HGIRVNAVAPTITLTEL 183 GI NA+ P TE+ Sbjct: 199 FGINTNAICPGYIGTEM 215 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.131 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 449,333 Number of extensions: 14210 Number of successful extensions: 155 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 109 Number of HSP's successfully gapped: 23 Length of query: 241 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 160 Effective length of database: 921,564 Effective search space: 147450240 Effective search space used: 147450240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)