BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0860.p
         (548 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980629|ref|YP_001351958.1| glycerol kinase [Janthinobacter...    70   3e-13

>gi|152980629|ref|YP_001351958.1| glycerol kinase [Janthinobacterium
           sp. Marseille]
          Length = 498

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 115/521 (22%), Positives = 193/521 (37%), Gaps = 64/521 (12%)

Query: 1   METYLIGIDVGTGSARAGVFDRSGNLQASARHDIALFRDERRARVEQSSAQIWDAVCQAV 60
           M  +++ ID GT S+RA +F+  G +   A+ +      E    VE  +  IW++     
Sbjct: 1   MSQFILAIDQGTTSSRAILFNHEGQIHGVAQQEYPQIFPEP-GWVEHDANAIWNSQLAVA 59

Query: 61  RAAVEQAGIDPAAVVGIGV-DATCSLVVQGAQGGVGDADHPERDVIVWMDHRALEQAQRI 119
           R  +++  +    +  IG+ +   + V+   + G      P  + IVW D R      ++
Sbjct: 60  RQVLKENKLSATDIAAIGITNQRETTVIWDRKTG-----QPIANAIVWQDRRTAAYCDQL 114

Query: 120 NATAHAVL--SYVGGVISPEMETPKLLWLKEHLPEVYHSAAH----FFDLTDFLTWKATG 173
            A   A L     G V+       K+ WL +H+P+    A      F  +  +L +K +G
Sbjct: 115 RAEGKADLFQQKTGLVLDSYFSGTKVKWLLDHIPDARARAERGELAFGTIDSWLVYKLSG 174

Query: 174 SLQRSSCTVTCKWTYLAHEGRWDADYFQRIGLGDLAEQGFARIGQEVVWPGTALDGGLSA 233
           +    S   +    +  H  +WD +    + + D+            + P      G+++
Sbjct: 175 AHLTDSSNASRTLLFNIHTLQWDEEL---LAIFDIPAS---------LLPAVVASSGIAS 222

Query: 234 EAAQALQLRPGIAVAAGLIDAHAGGVGTVAAR-GGAEDAAACMAYVFGTSSCTMTSNAQA 292
                L   P IA+A    D  A   G    + G A++      ++   +     S+   
Sbjct: 223 HTHTELFGAP-IAIAGIAGDQQAATFGQACHKPGMAKNTYGTGCFMLLNTGTHAISSHNN 281

Query: 293 VFVPGVWGPYYNAMAPGMWLNEGGQSAAGAAIDHLLRLHPATPQARLQATSAAMELPQWL 352
           +     W       A   ++ EGG    GA +                         QWL
Sbjct: 282 LLTTIGWTLGIGKAAQTNYMLEGGVFMGGAIV-------------------------QWL 316

Query: 353 ------AQRALAAVSQPAQAVWLAGQLNVVPEFLGNRSPLADPEARALLLGLGMEHDIDS 406
                  QR+ A V   A +V   G +  VP F G  +P  D  AR  +LG+    +   
Sbjct: 317 RDGLGIIQRS-ADVEALATSVPDNGGVVFVPAFSGLGAPYWDSYARGTILGMTRGSNKAH 375

Query: 407 LVALYVAGLCSLGYGLRQIIEA-QAACGVRIASISVSGGAGTHPLTRQLLADATGLPVEM 465
           +     A L S+ Y    +++A Q         + V GGA  + L  Q  AD   +PV  
Sbjct: 376 IAR---AALESIAYQSVDLLDAMQKDAQSSSQELRVDGGASRNDLLMQFQADILNVPVIR 432

Query: 466 TACPEPVLLGSAMLAAVAAGSYPDLQSAMPAMSALAGRNEP 506
               E   LG+A LA +A  S+      + A   +  R EP
Sbjct: 433 PVVTETTALGAAYLAGLAV-SFWQSAEEITAQWKMDKRFEP 472


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.132    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,280,180
Number of extensions: 52022
Number of successful extensions: 198
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 460
Effective length of database: 895,685
Effective search space: 412015100
Effective search space used: 412015100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)